Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120977g00002 ATGGAGATGAAGATGGAGATGAGAGTGATGGAAAATACAGAGATAGCAACGGATATGACTCCATCCCTCCTCCCTCTCACATTTGCTCTCCACAACAACAATCTCCAAACACACTGCTCATCTTGTTTCTCTCTCCTCCCTCCTTCTCCCATTCACATCACGCCCTTCCTCTTCCTCTACTGCTCTCCACCCTGCTCCGCCGCCCACACTTTCCTCCTCCGCCTCCACCACCCCGCTCTCTCTCACTCCTCCGACCTCCGCGCCGCCCTCCTCCTCCTCTCCGACCACCGCCCCTCCGCCACTTCCTTTCGCATCGCCGGCCTCCTCTCCAACCGCCACAAACTCACGTGCCATCACAGCTCCGACGAAGACGAGATTTCCGAGACGATCAGGGCCGGAGCCAGAGCCTTGGCCACTGCAATTACGGAGCTGCGAGGTGAGAATGCGCCGAACGACGCCGTTTTGGACGAAGCGGAGTGCGCGCTGTGCGCGGTGCTAACGAACGCCGTGGAGGTGCAGGATAAGGAAGGGCGCGCACTCGGAATCGCGGTTTATGGTCCGGCGTTTTCTTGGATCAACCACAGCTGCTCCCCCAATGCCTGCTACCGCTTCATCCTCTCTCCTCCTCCTCCTTCTTCTTCTTCCAAGCTTCGAATATGTCCATCCTTCTTTCGCGGTTCTCTTGATTCACAAATATATAGTGGAGTTTGTTCTATCACTAATCAATTTCAAAAAGAAGAAGAGGAGCAAGGCTATGGACCGAGATTGATTGTGAGGAGTATCAAGAGAATCAAAAAGGGACAAGAGGTTACCATAGCATATACTGATCTCTTGCAATCTAAGGCGATGCGGCAATCGGATCTATGGTCGAAGTACAGGTTTATCTGCTGTTGCGAGCGATGTAGCGTTGTGCCCTTTACTTATGTTGATCGTGTACTGCAAGAAATTTCTGTTTCTGGTTGTGATTTTGCCTGTTCAAGCTCCAACTACAATCTTCTTAAAGACACAGCAGAAAGAAGACTGACTGATTCAGTTGATGATGCTATATCTGAGTATCTGGTAGTTGGTGATCCTGAGTCTTGCTGTGAGAAGCTTGAGAAGATTCTTATGCAGGGTCTGCGCAGCGAGTTGGACAATATTGAAGAAACATCACATTACAAGTTCATGCTGCATCCCCTGCATTACCTTTCCCTAAATGCATACACAACACTGGCTTCGGCATATAAAGTTCGTGCTAGTGATATATTGTCTACAACTTCTGAAATAGATCAAAACCACTTAGAAGCTTTTCACATGAGCAGAACCAGTGCAGCATATTCCTTGTTACTAGCAACTGCAACACATCATCTCTTCAATTCCGAATCCTCACTGATTGCATCTCTTTCAAATTTTTGGATCGGTACAGGCGAGTCTTTGTTATATCTTGCTAGAAGTTCAGACTGGAGCGAGTTTGTCAAATCAAGTCCGGTTGCTTCTTCGGTTGCCAAGGTCAAATGTTCCAAGTGTTCATTAATGGATATATTTAGAGCCTGTATGTGTAGTGGTAAAATTAAGAATGATGATTTTGAGAATGTATCAAATGAGTTCCTTGATTGCATCTCAAATGATGCAACACAGAAGGTTTGGAGCTTCCTTATCAATGGTTGCCATTTTTTGAGATCAATCAATAATCCTATCGATTCGGGATGGTTAGTCTCCACCAGAAATTCCAGAACAACGGATCATCCCAGAGCTCAGGTTAAGAAAAAGTCTGAAACATGTGAAGAACAAACTTGCAATGATAATGCAAGGATACAAATATTTCAGCTGAGTGTACACTGCTTAGCATATGGAGGATTATTGGCTTCTATATGTTATGGTCACCATTCCCATTTGGCTTCATATGTAGAACAAATTCTGTATGATGAAGACAATCTTATATTGTTATAG 1929 0.4583 MEMKMEMRVMENTEIATDMTPSLLPLTFALHNNNLQTHCSSCFSLLPPSPIHITPFLFLYCSPPCSAAHTFLLRLHHPALSHSSDLRAALLLLSDHRPSATSFRIAGLLSNRHKLTCHHSSDEDEISETIRAGARALATAITELRGENAPNDAVLDEAECALCAVLTNAVEVQDKEGRALGIAVYGPAFSWINHSCSPNACYRFILSPPPPSSSSKLRICPSFFRGSLDSQIYSGVCSITNQFQKEEEEQGYGPRLIVRSIKRIKKGQEVTIAYTDLLQSKAMRQSDLWSKYRFICCCERCSVVPFTYVDRVLQEISVSGCDFACSSSNYNLLKDTAERRLTDSVDDAISEYLVVGDPESCCEKLEKILMQGLRSELDNIEETSHYKFMLHPLHYLSLNAYTTLASAYKVRASDILSTTSEIDQNHLEAFHMSRTSAAYSLLLATATHHLFNSESSLIASLSNFWIGTGESLLYLARSSDWSEFVKSSPVASSVAKVKCSKCSLMDIFRACMCSGKIKNDDFENVSNEFLDCISNDATQKVWSFLINGCHFLRSINNPIDSGWLVSTRNSRTTDHPRAQVKKKSETCEEQTCNDNARIQIFQLSVHCLAYGGLLASICYGHHSHLASYVEQILYDEDNLILL 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120977g00002 642 Gene3D SET domain 25 204 IPR046341 -
Stsc120977g00002 642 Pfam SET domain 166 274 IPR001214 GO:0005515
Stsc120977g00002 642 SUPERFAMILY SET domain 182 299 IPR046341 -
Stsc120977g00002 642 CDD SET_SMYD 149 301 - -
Stsc120977g00002 642 PANTHER PROTEIN SET DOMAIN GROUP 41 5 637 - -
Stsc120977g00002 642 Gene3D - 84 169 - -
Stsc120977g00002 642 Gene3D SET domain 253 301 IPR046341 -
Stsc120977g00002 642 Gene3D - 38 83 - -
Stsc120977g00002 642 SUPERFAMILY SET domain 25 296 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120977g00002 Stsc-Chr120977 14412 18392 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc120977g00002 SET 5.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120977g00002 - - ahf:112802999 996.112