Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120976g00001 ATGAAGAGAATTGGAAGCTCAGATTCTTTGGGAGCTCTCATCACAATTTGTCCATCATCAACAGAGGAGCAGAGTCCGAGGATGAGCAACCACGTGTACGGTGGTGATCCATTGTTCCAGTCGATGGTGCTGGATGGTCTAGACGAAGAAGGGTGCACAGGAGAGGAATCCGGAGGGCACCGCAGTGAGAATTCGAAGAAGCGTAGACTAAGCGTGGAGCAAGTGAAAGCGTTGGAGAAGAACTTCGAGGTTGAGAACAAGCTTGAACCTGAGAGGAAGGTGAAGTTAGCACAACAACTTGGGTTGCAGCCTAGACAGGTGGCGGTTTGGTTCCAGAACCGCCGCGCTAGGTGGAAGACTAAACAGCTTGAGAGAGATTATGGTGTTCTTAAGAATAATTATGAAGCTCTTAAGCTTAATCATGATGCACTCAAACAGGACAACCACGCCTTGCACAACCAGATCAAGGAATTGAAGACGAGGTTACAAGAAGAAAACACAGTCAGGAATGTTTTCGTGAAGGAGAAAGAGAAAACAGTGCCAGAATTAGAAAAGAAATTATTGGTGACGAATGAAGAGGACAATTCCTTCAATGACAACGACGACCTAGATGTCATTGCTAATGGTAAAACAATAGCAACAGCATCTCGGCCGCCATCGTCACCACCGCTCTTTCTTTCTGATTTCAACAAAGATGGTTGCTCTGATAGCGATTCGAGTGCGATCCTAAACGAAGACACCAACAATAACAATTGTGGCAATAGTCCCAAAGATGCAATTTCTTCGCTTCAAAGTAACCATCACTTGTTGATGTTTTCAGAGTCTTCTCCATTGAAATTGAACTGTTCCATGTTGACTTCTTCGTCTTCCATGAATTGCTTCAAATTCCAAAAACCGTACCTAAATATGCAATTCAGCGGCGTGAAGATGGAAGAGCATAACTTCATTGGTGGTACAGACGAGGCGTGCAATCTGATCTTCTCCGATGAACAACCACCCACCCTTCATTGGTACTCTTCAGATCAGTGGGGTTAA 1035 0.4473 MKRIGSSDSLGALITICPSSTEEQSPRMSNHVYGGDPLFQSMVLDGLDEEGCTGEESGGHRSENSKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQQLGLQPRQVAVWFQNRRARWKTKQLERDYGVLKNNYEALKLNHDALKQDNHALHNQIKELKTRLQEENTVRNVFVKEKEKTVPELEKKLLVTNEEDNSFNDNDDLDVIANGKTIATASRPPSSPPLFLSDFNKDGCSDSDSSAILNEDTNNNNCGNSPKDAISSLQSNHHLLMFSESSPLKLNCSMLTSSSSMNCFKFQKPYLNMQFSGVKMEEHNFIGGTDEACNLIFSDEQPPTLHWYSSDQWG 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120976g00001 344 Pfam Homeobox associated leucine zipper 121 163 IPR003106 GO:0006355|GO:0043565
Stsc120976g00001 344 MobiDBLite consensus disorder prediction 49 68 - -
Stsc120976g00001 344 SUPERFAMILY Homeodomain-like 54 123 IPR009057 -
Stsc120976g00001 344 Pfam Homeodomain 66 119 IPR001356 GO:0003677
Stsc120976g00001 344 MobiDBLite consensus disorder prediction 53 68 - -
Stsc120976g00001 344 CDD homeodomain 66 122 IPR001356 GO:0003677
Stsc120976g00001 344 Gene3D - 37 122 - -
Stsc120976g00001 344 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Stsc120976g00001 344 SMART HOX_1 64 125 IPR001356 GO:0003677
Stsc120976g00001 344 Coils Coil 120 168 - -
Stsc120976g00001 344 FunFam homeobox-leucine zipper protein ATHB-6-like 69 115 - -
Stsc120976g00001 344 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Stsc120976g00001 344 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
Stsc120976g00001 344 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Stsc120976g00001 344 Coils Coil 173 193 - -
Stsc120976g00001 344 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 287 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120976g00001 Stsc-Chr120976 1304 4636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120976g00001 1 343 Homeobox Transcription Factor Family AT2G22430 45.559 2.63e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc120976g00001 Homeodomain 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120976g00001 K09338 - zju:125423848 347.436