Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120975g00009 ATGGCCAACGCTGGTCTTGATGCTTTTTTATTTGATCAAAACAAACGTGAAATGCTGGACTGGCCTAAGCGGGAAAAAATTATAAATGGAATTGCAAGAGGTCTTTCGTATTTACACGAGGATTCCCGGCTAAAAGTTATTCACAGAGATTTGAAAGCTAGCAACATATTGTTAGATGAAGATATGAATCCAAAGATATCGGATTTTGGAACAGCTAGAATATTTTATAGAGAGCAAACTGAAGCAAACACTGAAAAGGTTATTGGTACATATGGTTATATGGCCCCGGAATATGCTTTGGAAGGGTGGTTTTCTGTCAAATCTGATGTTTACAGCTTTGGAATACTAATGTTGGAAATTTTAAGTGGGAGAAAGAACATTGGTTTCAACCAACCAGAGCTTCGCCGTGATCAAACCTTAACTCTTATTTCCTATGCATGGCGACTCTGGAACGATGGCAAGGAGCTTGAATTTCTGGATCGTATCCTAGTCAATGCTTGCCCCATAGGTGTGGCATTGAGATGGATTCATATTGGACTCTTATGTGTTCAAGAAAATCCCAAACACAGGCCTACCATGTCCTCGGTTATTTTGATGCTTGGAAGTGCTACAACCCTTCCTCGACCACTTGCACCTCCATTTTCTTCAAGCAACTATTATGATACAAATGATGACCAATCTTCAACAACTGAAGAAGAAGATGATATGGAATTTCAACCCTCTTCCAGTAAAAGTAATAAAAATTTAAAAAGTAGATTCATAGGATAG 768 0.3854 MANAGLDAFLFDQNKREMLDWPKREKIINGIARGLSYLHEDSRLKVIHRDLKASNILLDEDMNPKISDFGTARIFYREQTEANTEKVIGTYGYMAPEYALEGWFSVKSDVYSFGILMLEILSGRKNIGFNQPELRRDQTLTLISYAWRLWNDGKELEFLDRILVNACPIGVALRWIHIGLLCVQENPKHRPTMSSVILMLGSATTLPRPLAPPFSSSNYYDTNDDQSSTTEEEDDMEFQPSSSKSNKNLKSRFIG 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120975g00009 255 MobiDBLite consensus disorder prediction 241 255 - -
Stsc120975g00009 255 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 241 - -
Stsc120975g00009 255 Pfam Protein tyrosine and serine/threonine kinase 3 198 IPR001245 GO:0004672|GO:0006468
Stsc120975g00009 255 FunFam Uncharacterized protein 1 205 - -
Stsc120975g00009 255 MobiDBLite consensus disorder prediction 211 255 - -
Stsc120975g00009 255 ProSiteProfiles Protein kinase domain profile. 1 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120975g00009 255 SMART serkin_6 9 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120975g00009 255 ProSitePatterns Serine/Threonine protein kinases active-site signature. 46 58 IPR008271 GO:0004672|GO:0006468
Stsc120975g00009 255 MobiDBLite consensus disorder prediction 211 225 - -
Stsc120975g00009 255 Gene3D Transferase(Phosphotransferase) domain 1 1 207 - -
Stsc120975g00009 255 SUPERFAMILY Protein kinase-like (PK-like) 2 226 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120975g00009 Stsc-Chr120975 60604 62450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120975g00009 1 214 Receptor kinase-like Gene Family AT4G23230 57.674 3.66e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc120975g00009 PK_Tyr_Ser-Thr 2.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120975g00009 - - lang:109348525 331.643