Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120974g00005 ATGGATCTGCACTTTGACATAGAGACTGAAGCTACTCACCATTCAATGGCACTTCCAGAGGAGAAGCAGCCAACTCAAATCTTCAACAATGCAAATCTGCCTGTGCTTCTCAAGTTCTGTGATGTTGTTTATAAAACCAATGTTGAAAAAGAGGGATTCGTTAACAAAAAGGTGGAAGAGAACACAATACTCAAAGGGGTTTCAGGAATTGTTAAACCAGGTGAAATTCTAGCCATGCTAGGCCCATCTGGAAGTGGCAAAACAACTCTCCTAACAGCATTAGGAGGCAGACTTGGAGGAAAACTCTATGGTAACATAACTTACAATGGCAAACCCTTCTCCAACGCCATGAACCGTCTCACCGGCTTTGTTACTCAGGATGATGTTCTGTATCCTCATCTAACCGTCACTGAGACTCTGATCTTCACCGCGCTTCTTAGATTGCCGAGTAGTAGGTTCACCAAAGAAGAGAAGATAATGCATGCGAAGAATGTGATTGCTCAACTAGGCTTAACTGAGTGCAAAGATAGCATGATTGGAGGATCAATTCTGAGAGGGGTTTCTGGGGGAGAGAGGAAAAGGGTTAGCATTGGGCAAGAATTGTTGATGAATCCAAGCTTGTTGCTTTTGGATGAACCAACCTCCGGCTTAGATTCGACAACGGCACAAAGAATTGTATCAACTTTGTCTGAGCTAGCAATTGATGGAGAGAAAACTATTGTGATGACAATACACCAACCTTCTAGTAGGATCTACTACATGTTTCATAAGGTCTTGCTCTTATCAGAAGGGAACCTTGTGTACTTTGGAATGGGTTCTGAAGCCATTAAATACTTCTCTAGCATTAACTTTGCTCCTTCTATGGCCATGAATCCTTCAGACTTCTTACTTGATCTTGCAAATGGTATTTACACAGGTCAAGCAAACGAGGACCATGCCTTGAACAAGAAGAAATTGATTTGTTCCTACAAGGAACACTTTAGTGACACAATAGAACCAATAATTTTTCATGAAAATTGTGACTTTGATAAGAGTGAAGGTAGATTTGAAGATGAAAAAAGCTTTGGGAATTGGCCTACCAATTGGTGGCAACAGTTCATTTTGCTGCTAAGAAGAGATGTCAAAGAGAGAAGATATGAATCATTCTCTTGCATGCTGATTTCTGAAGTTATTGCGGCTGCCATTATTACAGGGCTAGTATGGTACAAGTCTGATATTTCCCACTTGCAAGATCAGATTGGACTTATATTCAACATGATTAATTTTTGGTTTGCATTCCCACTCTACCGAGCAATATTCACCTTTCCCCTTGAAAGACCAATGTTGGAGAAAGAAAGATCCTCCGGAATGTACAGACTCTCCTCATACTTCATGGCAAAGTCGGCGGCAGACCTTCCAATGGAGCTCGTTCTTCCCACTGGATATGTTATCATAACCTATTGGATGACAGGTCTGAAGGCGAATGCAGTTAACTTCATGTGCACGTTATCTACTATCTTACTCCACGTGTTAGTCGCGCAAGGGATTGCGCTCGCCATCGGTGCCATCACGATGGATATGAAATCTGTGACTACAATGGCTGCAGTGATCATGCTAATTTTCATGCTATCAGCTGGATACTTTGTTCAGCATTTGCCAAAATTTATAGTATGGTTGAAGTATATCTCTCCCAGTTTCTACACATACCAGCTCTTGATAGGATCACAGTATAAATCTAGTGAGATATACCCATGCTCTAACAACAATAATGGTGTGTGTTCAGTAGCAGAATTTCCTATGATAAAAACACAAATGGCTCTTGATATGAGAGAGCAAGGCATGGCTGCATTGGCTTTAGTTATCATGTTAATAGGTTATAGAGTTGTGGCTTATATTGCTCTTTTGAGAATTGGAGTGACAAAGAACATGGCCTAG 1914 0.4101 MDLHFDIETEATHHSMALPEEKQPTQIFNNANLPVLLKFCDVVYKTNVEKEGFVNKKVEENTILKGVSGIVKPGEILAMLGPSGSGKTTLLTALGGRLGGKLYGNITYNGKPFSNAMNRLTGFVTQDDVLYPHLTVTETLIFTALLRLPSSRFTKEEKIMHAKNVIAQLGLTECKDSMIGGSILRGVSGGERKRVSIGQELLMNPSLLLLDEPTSGLDSTTAQRIVSTLSELAIDGEKTIVMTIHQPSSRIYYMFHKVLLLSEGNLVYFGMGSEAIKYFSSINFAPSMAMNPSDFLLDLANGIYTGQANEDHALNKKKLICSYKEHFSDTIEPIIFHENCDFDKSEGRFEDEKSFGNWPTNWWQQFILLLRRDVKERRYESFSCMLISEVIAAAIITGLVWYKSDISHLQDQIGLIFNMINFWFAFPLYRAIFTFPLERPMLEKERSSGMYRLSSYFMAKSAADLPMELVLPTGYVIITYWMTGLKANAVNFMCTLSTILLHVLVAQGIALAIGAITMDMKSVTTMAAVIMLIFMLSAGYFVQHLPKFIVWLKYISPSFYTYQLLIGSQYKSSEIYPCSNNNNGVCSVAEFPMIKTQMALDMREQGMAALALVIMLIGYRVVAYIALLRIGVTKNMA 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120974g00005 637 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 37 288 IPR003439 GO:0005524
Stsc120974g00005 637 Pfam ABC transporter 64 215 IPR003439 GO:0005524
Stsc120974g00005 637 Gene3D - 53 283 IPR027417 -
Stsc120974g00005 637 Pfam ABC-2 type transporter 364 570 IPR013525 GO:0016020|GO:0140359
Stsc120974g00005 637 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 21 624 - -
Stsc120974g00005 637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 282 IPR027417 -
Stsc120974g00005 637 ProSitePatterns ABC transporters family signature. 187 201 IPR017871 GO:0005524|GO:0016887
Stsc120974g00005 637 SMART AAA_5 73 265 IPR003593 GO:0016887
Stsc120974g00005 637 FunFam ABC transporter G family member 22 52 282 - -
Stsc120974g00005 637 Pfam ABC-2 type transporter 245 337 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120974g00005 Stsc-Chr120974 16148 19437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120974g00005 19 277 Calmodulin-binding Proteins AT2G36910 23.636 7.18e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120974g00005 K05681 - gmx:100816135 772.311