Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120973g00004 ATGCTTCTGGACAAGAATGCCATCCATGAAACGCATTATGATGTTCTCAATGTCAAGGAGGATGCAAGTTACGATGAAATCCGTGCTAGTTACCGCTCCGCTGTGCTCAGTTTACATCCTGATAAGCTTTTGAAAACTTCTGATGCATCCAGCAGCAATCAAACCACTGGAGACAGATTTCTCAAAGTACAAAAGGCATGGGAAGTTCTTGGCGATTCAAGCTCTCGTTTATTTTATGATAATGAGCTTCGAAGTTCAAGGCGTGATGTCTCGGCCGTTGATGTTGCGGAAGATTTAAGCTTAGATGATATGATGGCCGAAGACGACGGAGAAGCATTGGAACTGTTTTATCAGTGCAGATGTGGTGATTACTTCTCTATAGACTCATTGGAATTGCAGAAAATGGGGTATTTCTTGTTGAGAGATGAAAGTAGGATATCTATATTGAACGATGATTCTTTGCCAGGATCAGTGATTCTTCCTTGTGGATCATGTTCTCTAAAAGCTCGTCTGATAGCAACCCAATACTATCTCATCCTTGGATAG 546 0.4158 MLLDKNAIHETHYDVLNVKEDASYDEIRASYRSAVLSLHPDKLLKTSDASSSNQTTGDRFLKVQKAWEVLGDSSSRLFYDNELRSSRRDVSAVDVAEDLSLDDMMAEDDGEALELFYQCRCGDYFSIDSLELQKMGYFLLRDESRISILNDDSLPGSVILPCGSCSLKARLIATQYYLILG 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120973g00004 181 SUPERFAMILY CSL zinc finger 96 172 IPR036671 -
Stsc120973g00004 181 SUPERFAMILY Chaperone J-domain 10 83 IPR036869 -
Stsc120973g00004 181 ProSiteProfiles dnaJ domain profile. 11 83 IPR001623 -
Stsc120973g00004 181 Gene3D DnaJ domain 2 87 IPR036869 -
Stsc120973g00004 181 FunFam DNAJ heat shock N-terminal domain-containing protein-like 89 176 - -
Stsc120973g00004 181 Pfam DnaJ domain 11 80 IPR001623 -
Stsc120973g00004 181 Pfam CSL zinc finger 98 172 IPR007872 -
Stsc120973g00004 181 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 95 174 IPR007872 -
Stsc120973g00004 181 PRINTS DnaJ domain signature 13 31 IPR001623 -
Stsc120973g00004 181 PRINTS DnaJ domain signature 31 46 IPR001623 -
Stsc120973g00004 181 PRINTS DnaJ domain signature 55 75 IPR001623 -
Stsc120973g00004 181 Gene3D DPH Zinc finger 88 178 IPR036671 -
Stsc120973g00004 181 PANTHER DPH3 HOMOLOG-RELATED 11 173 IPR044248 GO:0017183|GO:0046872
Stsc120973g00004 181 SMART dnaj_3 10 75 IPR001623 -
Stsc120973g00004 181 CDD DnaJ 11 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120973g00004 Stsc-Chr120973 22526 24544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120973g00004 12 80 C2H2 Transcription Factor Family AT1G74250 43.478 1.94e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120973g00004 K17867 - gmx:100814856 280.411