Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120971g00021 AAGGGGGTTCTCAGCTTCAACGAGAAGAGAGAGAGAAAGAGGTGGTTGCCACATACAAAGGAGGAGAAGAGAACCCTAGGAGAGAGAAACTTATTTGCTTTCATTTCAAGCCCTTTTCGCATTGCGTTTCGGGATCTCGAATCTTCAATCTACAAAGGTGTTGGTTCCGCTTTTATGGCAAATTCAAAGGGCTCTTCGGGCATCAGAAATTTGATGTATTCTGGAAAGCATGCTCTGCTTCCTCCTAAAATCCCATTCCCAAGTGTTTCCCAAGCTTATGCGGATTATATGCCGAATCCTGCAGTAGGTTCGAAGGTTGCGCAGAGACCTAGAGAGGGAAATGGATTCCACCAACGGACATCATCCGAGAGCTTTATTATAGAGGAGCAACCCTCATGGCTTGATGATCTCCTTAATGAGCCGGAGACACCTGTACGAAGGGGCAGTCATCGCCGTTCATCCAGTGATTCTTTTGCCTACCTAGACAATGCTAATGTTTCTAACACCGGTTATGCAGATAAGGATGAGTTTAAATTTAGGAATTTAGGATCTATTCCATCTTGGTCACCTCAAGACTTTAATCACAGCAAAGATGTTCGTCATATGCCCATGTATGCAGAAATGAACTCAACTAAAATGAAGAATAGAGCATGGGACTCTTGTTTGAATGTTCCCACACATCCAGGTGGTGTTCCTGCTGTCAAAGACAATGTCACTTTTCAGAATTCAGGACTGTCGTGCCCACCACATGAATCAGATGGGATTCCATCAACAGCCAATGAAAAGCATGATGCAGTAGAATCTGGTTCACAGGATGCAAAATTATCTTCAGAAAGAAAGGATGGTTCAAATGCAAAGTCATCTGCTACTGAAACAGATTCAAAACGTGCTAAACAGCAATTTGCTCAACGTTCACGAGTCCGTAAACTTCAATACATAGCTGAACTAGAAAGAAATGTACAAGGTTTACAGGCAGAAGGATCTGAAGTATCTGCTGAGCTTGAATTTCTTAACCAGCAGAATCTTATCCTGAGTATGGAGAACAAAGCTCTCAAGCAACGATTAGAAAGTTTAGCACAAGAGCAGCTTATCAAATATTTGGAGCAGGAAGTACTGGAAAGAGAGATTGGAAGATTACGTGCAATGTATCAGCAGCAACAGAATCAGCCACAGCAGTTGCCACAGCAACCTTCTGGCAGCCATCGGCGCACAAATAGCAGAGACCTTGAATCCCAGTTTGCTAACCTTTCTCTAAAACACAAGGATGCGAATTCAGCGCGTGATCCTGTTACCGGTGCACTTCGAATTTAG 1311 0.4333 KGVLSFNEKRERKRWLPHTKEEKRTLGERNLFAFISSPFRIAFRDLESSIYKGVGSAFMANSKGSSGIRNLMYSGKHALLPPKIPFPSVSQAYADYMPNPAVGSKVAQRPREGNGFHQRTSSESFIIEEQPSWLDDLLNEPETPVRRGSHRRSSSDSFAYLDNANVSNTGYADKDEFKFRNLGSIPSWSPQDFNHSKDVRHMPMYAEMNSTKMKNRAWDSCLNVPTHPGGVPAVKDNVTFQNSGLSCPPHESDGIPSTANEKHDAVESGSQDAKLSSERKDGSNAKSSATETDSKRAKQQFAQRSRVRKLQYIAELERNVQGLQAEGSEVSAELEFLNQQNLILSMENKALKQRLESLAQEQLIKYLEQEVLEREIGRLRAMYQQQQNQPQQLPQQPSGSHRRTNSRDLESQFANLSLKHKDANSARDPVTGALRI 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120971g00021 436 SMART brlzneu 291 350 IPR004827 GO:0003700|GO:0006355
Stsc120971g00021 436 SUPERFAMILY Leucine zipper domain 302 344 IPR046347 GO:0003700|GO:0006355
Stsc120971g00021 436 MobiDBLite consensus disorder prediction 383 402 - -
Stsc120971g00021 436 Coils Coil 369 389 - -
Stsc120971g00021 436 MobiDBLite consensus disorder prediction 383 436 - -
Stsc120971g00021 436 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 68 418 IPR044797 -
Stsc120971g00021 436 Coils Coil 306 361 - -
Stsc120971g00021 436 MobiDBLite consensus disorder prediction 233 302 - -
Stsc120971g00021 436 MobiDBLite consensus disorder prediction 256 300 - -
Stsc120971g00021 436 CDD bZIP_plant_RF2 295 341 IPR044759 GO:0003700|GO:0006355
Stsc120971g00021 436 Gene3D - 295 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120971g00021 Stsc-Chr120971 87517 90873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120971g00021 78 365 bZIP Transcription Factor Family AT2G42380 29.582 4.21e-24 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120971g00021 - - gmx:100813098 574.318