Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120971g00019 ATGGAGACTCAGTTCAATCACAACCTCTTCGAGCGCCGTCCCTTCCTCAAATCCAAGGCTCCCGCCGTTAAATGGGTCAAACAATGGGTTCCTCAAGATGTTGTATCTACTGGCGGGAAGTGCATGCTCCTAAGATGGGTAACAGAGGATTCCTTAAAGGCCTTGAAAGAAAAGGAAAAAGAGCCTTCAGCACCCGAGCCTGAACCAGAGCCAACTACTGAAGTACTCTTTCTATGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCTTTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATTTGTTTGCCACTATGAGGGATGTGGAAAGAAATTTCTGGACAGCTCAAAGTTGAAAAGACATTTCCTCATTCATACAGGGGAGAGAGATTTTGTGTGTCCTCATGAAGGTTGTGGTAAGGCCTTCTCCTTGGATTTCAACCTGCGGTCCCACATGAAAACACATTCACAAGAGAACTATCATATCTGCCCATACCCAGATTGTGGAAAGAGATATGCTCACGAATACAAGCTAAAGAATCATATTGCATCTCAGCATGAAAAGAATGCATCAGTGGATGTGACCAAGTATACTCCGCCTTCCGAGAAGCAACCGAAACCAACTAAACCTGCTAGTGGAACTTACGGTTCTGCATCATCTGATCGCCCGTATGCATGTCCTTATGATGGATGTGAAAAAGCTTACATCCATGAATACAAACTTAAACTCCATCTGAAGAGGGAGCACCCAGGCCACGACGAAAATGCTGTGCATGCACAAGCCAATGCTGACAATGAAATGGATGAAGCGAGTGAACAAGATGCCTATGGTAGAAAACGATCAAATGGTAAAAGTCGGAAGCAAAGCAGGCCTAAGCCAAGCTTGAAGTTGCCTCCTGCCAAAATCGCTCAAAGAAAAGGGTCAGCTCCTACTCCAGCCGCATCTAATGCGATCAAAAAGCCATGGCCGGTGAAAGAAGAAATCTACGATGAAGATAGTGAAGAAACAGAAGAGGATCGTGACAATGTTGAAGATGGGTGGAGATATGGTGCAAACAACGATGATGATGATGAGGAAACAGAATATGAAGACTGA 1110 0.4495 METQFNHNLFERRPFLKSKAPAVKWVKQWVPQDVVSTGGKCMLLRWVTEDSLKALKEKEKEPSAPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASQHEKNASVDVTKYTPPSEKQPKPTKPASGTYGSASSDRPYACPYDGCEKAYIHEYKLKLHLKREHPGHDENAVHAQANADNEMDEASEQDAYGRKRSNGKSRKQSRPKPSLKLPPAKIAQRKGSAPTPAASNAIKKPWPVKEEIYDEDSEETEEDRDNVEDGWRYGANNDDDDEETEYED 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120971g00019 369 Gene3D Classic Zinc Finger 203 277 - -
Stsc120971g00019 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 259 IPR013087 -
Stsc120971g00019 369 FunFam Putative zinc finger protein 143 103 133 - -
Stsc120971g00019 369 ProSitePatterns Zinc finger C2H2 type domain signature. 231 254 IPR013087 -
Stsc120971g00019 369 FunFam zinc finger transcription factor YY1 77 102 - -
Stsc120971g00019 369 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Stsc120971g00019 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Stsc120971g00019 369 MobiDBLite consensus disorder prediction 188 226 - -
Stsc120971g00019 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Stsc120971g00019 369 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Stsc120971g00019 369 Gene3D Classic Zinc Finger 103 133 - -
Stsc120971g00019 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 196 IPR013087 -
Stsc120971g00019 369 Pfam Zinc finger, C2H2 type 166 191 IPR013087 -
Stsc120971g00019 369 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Stsc120971g00019 369 SMART c2h2final6 136 160 IPR013087 -
Stsc120971g00019 369 SMART c2h2final6 77 101 IPR013087 -
Stsc120971g00019 369 SMART c2h2final6 229 254 IPR013087 -
Stsc120971g00019 369 SMART c2h2final6 166 191 IPR013087 -
Stsc120971g00019 369 SMART c2h2final6 106 130 IPR013087 -
Stsc120971g00019 369 MobiDBLite consensus disorder prediction 192 224 - -
Stsc120971g00019 369 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 310 - -
Stsc120971g00019 369 FunFam zinc finger transcription factor YY1 163 194 - -
Stsc120971g00019 369 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Stsc120971g00019 369 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Stsc120971g00019 369 MobiDBLite consensus disorder prediction 266 369 - -
Stsc120971g00019 369 Gene3D Classic Zinc Finger 77 102 - -
Stsc120971g00019 369 Gene3D Classic Zinc Finger 134 161 - -
Stsc120971g00019 369 FunFam Zinc finger transcription factor YY1 204 269 - -
Stsc120971g00019 369 Gene3D Classic Zinc Finger 162 191 - -
Stsc120971g00019 369 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Stsc120971g00019 369 SUPERFAMILY beta-beta-alpha zinc fingers 224 252 IPR036236 -
Stsc120971g00019 369 FunFam Zinc finger protein 410 134 161 - -
Stsc120971g00019 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Stsc120971g00019 369 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120971g00019 Stsc-Chr120971 80786 83342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120971g00019 8 355 C2H2 Transcription Factor Family AT4G06634 65.489 1.81e-147 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc120971g00019 zf-C2H2 0.0061 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120971g00019 - - zju:107412546 623.239