Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120971g00018 ATGGAACATGAAAATATGGGAGAAGGAGAAGAGAACTTCCACTATCAAGAGCTTCTGAAAGCAACCGATAACTTCAACCCTAAAACCATGATAGGCAAAGGAAGCCATGGAATCGTCTACAAAGGTCTCCTACCACGCAATAATAACAATAACACGGTGGCCGTGGCGGTCAAGAAACCATCCTCGCTTCAAGAATCGTCTCTCCACCGCCATGATGATAACTCCAACAAGCTCCAAAACGAGATTCGAGTGCTCTCAATTCTACGTAAAAGCCCTCACGTGCTTAACCTCTTAGGCACGAGCCGCGACTCGTTCGACAACAAGGTCATGGTGATGGAGCTCTTGCCCAACGGCTCCCTCCACGACTGGCTTCACGGTTCGAGAAGACCACCGCCGTCGTGGACGAAGCGCGTGGAGATCGCCATGCAGATCTCACGCGCGGTGCAATTTCTCCACGAAGGGAAGCCTACGGTGATCCACAGGGACATCAAGTCCACCAACATCTTATTTGATTCCGAGATGAACGCCAAATTGGGGGATTTCGGACTGGCGGTTATGGTTGGAACAGTTATCGAGTCAGCAGTGAGTCAACCCGCTGGGACAATAGGGTACATAGATCCGAGTTACACGAGTTCTGCGAAACTGAGCCCTAAGAACGATATTTTCAGCTTGGGGGTTGTGTTGTTGGAGATAATAAGCGGGAGAAAGGCTATTGACGTGTCGAAAACGCCGGCGTCGCTTGTGGAGTGGGCGGTTCCGTTGTTGGAGAGTAAGGTTGTTGGTGTGAAAGAGATTTGTGATGGGAGGGTGGCGTTGCCGGCGTTCATGGCGGGTGCGGTGGGTGAGATAGTGCGGTTGGCGGGACGGTGTGTGTCGGAGAAGGAAGAGGATCGTCCGTGTGCGAGGGAAGTTGTTATGAGAATGGAAGTTGTTGGGGAATGTGCGTGTGCGAGGGTGATGAGGTTCCCTTTTTGGAGAAGTGTGTTTATGAGGATGGTGGGATTAAGGGGAAATAATAATAAGAGGAGGAAGTTGTTGATGAATAATAGTTCAAAGACGTCATCTATGATCACGTTTAAGCAAGTTTTGGCTGATGTTACCTTCACCTAG 1110 0.5 MEHENMGEGEENFHYQELLKATDNFNPKTMIGKGSHGIVYKGLLPRNNNNNTVAVAVKKPSSLQESSLHRHDDNSNKLQNEIRVLSILRKSPHVLNLLGTSRDSFDNKVMVMELLPNGSLHDWLHGSRRPPPSWTKRVEIAMQISRAVQFLHEGKPTVIHRDIKSTNILFDSEMNAKLGDFGLAVMVGTVIESAVSQPAGTIGYIDPSYTSSAKLSPKNDIFSLGVVLLEIISGRKAIDVSKTPASLVEWAVPLLESKVVGVKEICDGRVALPAFMAGAVGEIVRLAGRCVSEKEEDRPCAREVVMRMEVVGECACARVMRFPFWRSVFMRMVGLRGNNNKRRKLLMNNSSKTSSMITFKQVLADVTFT 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120971g00018 369 Gene3D Transferase(Phosphotransferase) domain 1 115 318 - -
Stsc120971g00018 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Stsc120971g00018 369 ProSiteProfiles Protein kinase domain profile. 25 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120971g00018 369 Gene3D Phosphorylase Kinase; domain 1 2 113 - -
Stsc120971g00018 369 ProSitePatterns Protein kinases ATP-binding region signature. 31 59 IPR017441 GO:0005524
Stsc120971g00018 369 SMART serkin_6 25 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120971g00018 369 SUPERFAMILY Protein kinase-like (PK-like) 11 332 IPR011009 -
Stsc120971g00018 369 PANTHER OS01G0253100 PROTEIN 11 308 - -
Stsc120971g00018 369 Pfam Protein kinase domain 27 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120971g00018 Stsc-Chr120971 79248 80541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120971g00018 13 309 Receptor kinase-like Gene Family AT3G59420 40.397 1.46e-58 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc120971g00018 Pkinase 8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120971g00018 - - lang:109334080 369.392