Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120971g00003 ATGAACCGAACCATGTCCCCCACCCTCATTGTTTGGGTTCTGTTTTCACTCCTCTCTTGCTCTGCTTCTTCTTCTTCTTCATCCCTGCTCAGTGATTTCCATGCACTTGTCTCACTCAAACAAACATTTCAATTCCCAAACCCACCTCTCAAGAACTGGAACACTTCCAATCCTGTCTCCGTTTGTTCATGGACCGGAATTCAATGCCACCGGGGACGAGTTGTGTCTCTGGACTTGACAAATTTCAACCTCTACGGCTCTCTTTCTCCTTCAATTTCTCAACTGGACAGGCTCACACACCTCTCTCTTTCAGGAAACAACTTCACCGGCGCCATTGACGTCACCACCATGAGCACCCTCCAGTTCCTCAACATCTCCAGCAACCTCTTCAGTGGCCACCTCCATTGGAACTACTCCACCCTCCCCAGCCTGCAGGTTCTAGACGCCTACGACAACAACTTCACCGCCTTGCTTCCCGTGGGGCTTCTCGCTCTCAAGAAGCTCACTTACTTGGACCTCGGCGGCAACTACTTCTACGGCGAAATCCCGCCAAGCTACGGCAGCCTGGCGGGACTAGAGTACCTATCTCTGGCGGGAAACGACCTTCGCGGACGAATCCCGCCAGAGTTAGGCAACCTCACCAACCTCAGGGAGATATACTTAGGCTACTACAATTCCTTTGTAGGCGGCATTCCGGTGCAGTTCGGAAAACTCATCAATTTGGTGCATATGGATCTGTCAAGCTGTGACTTGGACGGTTCAATTCCGAGAGAATTGGGGAAGTTGAACCGGCTCGACACTCTTTACCTCCACATTAACCAGCTCTCCGGTTCGATCCCCAAGGAGCTCGGAAACTTAACCGTTCTTGTGAATCTTGACTTGTCCAGCAATGCACTCACCGGGGAGATTCCGGTCGAGTTCGCCAACCTCAGGCGTCTCAAGCTCTTTAACCTCTTCTTGAACAGGCTGCACGGCTCCATACCGGACTACATTGCGGAGTTTCCAGACCTGGATACGCTTGGCCTCTGGATGAACAACTTCACCGGCGAGATTCCCTACGGCCTCGGCTTCAACGGCAAGCTTCAGGTCATTGACTTGTCTTCCAACAAGCTCACCGGCGTGATTCCTCCTCACCTGTGTTCCTCTAAGCAGCTCAGGATTCTCATTCTCCTCAATAATTTCCTCTTTGGACCAATCCCCGACGGTTTCGGAACGTGTTACAGTCTCACCAGAGTGAGGTTAGGACAGAATTACCTCAATGGAACCATCCCTAACGGCTTTCTCTACCTTCCTAACCTCAACTTAGCTGAGTTACAGAACAACTACCTCACCGGAGCATTGCCGGAGAATTCCAATAGCTCTTCGCAGCCACAGAATTTAGCTCAGCTTGATTTGTCAAACAATGCATTGTCCGGTCCGCTGCCGAATTCGATTTCCAACTTCACCTCTGTTGAGATCCTTTTGCTGAGCGGGAACCAATTTTCGGGTCAAATTCCGGCTTCCATTGCAGGACTAAGTCAAGTACTGAAGCTTGATCTAAGCAGGAATTCGTTATCCGGTGAAATTCCACCGGAGATTGGTTACTGCAACCACCTTACCTACCTTGACATGAGCCAGAACAATCTCTCTGGCTCTATCCCGCCACTCATAGCGAATATCCGCATTTTGAATTACCTAAACTTGTCAAGAAACCATTTGAACCAAACCATCCCTAAATCAATAGGCACCATGAAGAGTCTCACCATTGCAGACTTCTCCTTCAATGAATTCTCCGGTAAGTTACCGGAGTCAGGCCAGTTTTCGTTCTTCAACGCCTCCTCTTTCGCAGGGAACCCTCAACTCTGCGGTTCTATGCTCAACAACCCCTGTAACTTCACCAGAATCACAACACAACAGGGAAAACGCTCTCCCGATTTCAAACTCATATTTGCTTTGGGGCTGTTGATCTGCTCCCTAGTGTTTGCAGTTGCAGCCATAATTAAGGCCAAGTCCTTCAAGAAGAATGGCCCCGGTTCATGGAAAATGACAGCATTCCAGAAGCTGGAATTTAGGGTTTCAGACATCATGGAATGCGTGAAAGACGGGAACGTGATCGGAAGAGGAGGTGCCGGGATTGTTTACCACGGGAAGATGCCAAATGGAGTTGAAGTTGCAGTTAAGAAGCTACTTGGAATGGGTGCGAGCAGCCATGATCATGGGTTCAGGGCAGAGATTCAAACGCTGGGGAACATAAGGCATAGAAACATAGTGAGGCTGCTAGCTTTCTGCTCCAACAACGAGACGAACCTGCTGGTGTACGAGTACATGAGGAATGGAAGCTTAGGGGAGGCGTTGCATGGGAAGAAGGGTGCGTTCTTGAATTGGAATTTGAGATACAAAATCGCCATTGATTCAGCTAAGGGACTGTGTTACCTTCACCATGATTGTTCACCCTTGATTGTCCACCGTGACGTCAAGTCCAACAATATCTTATTGAATTCCAATTTTGAAGCCCACGTGGCGGATTTCGGACTCGCAAAGTTCTTGGTGGACGGCGGCGCCTCCGAGTACATGTCTTCCATTGCTGGCTCCTACGGCTACATTGCACCCGAATATGCCTACACATTAAGGGTTGACGAAAAGAGTGACGTGTATAGTTTCGGAGTAGTAGTATTAGAGCTTCTAACCGGAAGGAAACCGGTGGGAACGGAGTTTGGCGAAGGAGTTGATCTGGTGCAATGGTGCAAGAAAGCAACGAATGGGAGGAAAGAAGAGGTTATGAACATAATTGATAAGAGGCTAAGCGTGGTCCCAAAAGAAGAAGCCATGCACCTTTTGTTCATTTCAATGCTGTGCTTAGAAGAAAACAGTGTGGAGAGACCAACCATGAGGGAAGTCGTTCAAATGCTCTCTGAATTCCCTCGTTCTTCTTCATCTCCACAATTACACCAATCTTCTTCCTCTCAAATACCTCACAAACACAAAGATTCTTCTCCTCTTCCTCATCCTCTTCCCACTTCTAATAAACAACACCTTTTCGTTTAA 3024 0.4854 MNRTMSPTLIVWVLFSLLSCSASSSSSSLLSDFHALVSLKQTFQFPNPPLKNWNTSNPVSVCSWTGIQCHRGRVVSLDLTNFNLYGSLSPSISQLDRLTHLSLSGNNFTGAIDVTTMSTLQFLNISSNLFSGHLHWNYSTLPSLQVLDAYDNNFTALLPVGLLALKKLTYLDLGGNYFYGEIPPSYGSLAGLEYLSLAGNDLRGRIPPELGNLTNLREIYLGYYNSFVGGIPVQFGKLINLVHMDLSSCDLDGSIPRELGKLNRLDTLYLHINQLSGSIPKELGNLTVLVNLDLSSNALTGEIPVEFANLRRLKLFNLFLNRLHGSIPDYIAEFPDLDTLGLWMNNFTGEIPYGLGFNGKLQVIDLSSNKLTGVIPPHLCSSKQLRILILLNNFLFGPIPDGFGTCYSLTRVRLGQNYLNGTIPNGFLYLPNLNLAELQNNYLTGALPENSNSSSQPQNLAQLDLSNNALSGPLPNSISNFTSVEILLLSGNQFSGQIPASIAGLSQVLKLDLSRNSLSGEIPPEIGYCNHLTYLDMSQNNLSGSIPPLIANIRILNYLNLSRNHLNQTIPKSIGTMKSLTIADFSFNEFSGKLPESGQFSFFNASSFAGNPQLCGSMLNNPCNFTRITTQQGKRSPDFKLIFALGLLICSLVFAVAAIIKAKSFKKNGPGSWKMTAFQKLEFRVSDIMECVKDGNVIGRGGAGIVYHGKMPNGVEVAVKKLLGMGASSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNNETNLLVYEYMRNGSLGEALHGKKGAFLNWNLRYKIAIDSAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFLVDGGASEYMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVVLELLTGRKPVGTEFGEGVDLVQWCKKATNGRKEEVMNIIDKRLSVVPKEEAMHLLFISMLCLEENSVERPTMREVVQMLSEFPRSSSSPQLHQSSSSQIPHKHKDSSPLPHPLPTSNKQHLFV 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120971g00003 1007 SMART serkin_6 692 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120971g00003 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Stsc120971g00003 1007 MobiDBLite consensus disorder prediction 967 987 - -
Stsc120971g00003 1007 Pfam Leucine Rich repeat 528 544 IPR001611 GO:0005515
Stsc120971g00003 1007 Pfam Protein kinase domain 694 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120971g00003 1007 SUPERFAMILY Protein kinase-like (PK-like) 685 963 IPR011009 -
Stsc120971g00003 1007 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 31 138 - -
Stsc120971g00003 1007 SUPERFAMILY L domain-like 358 616 - -
Stsc120971g00003 1007 MobiDBLite consensus disorder prediction 967 1007 - -
Stsc120971g00003 1007 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 139 225 - -
Stsc120971g00003 1007 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 661 768 - -
Stsc120971g00003 1007 Pfam Leucine Rich Repeat 360 380 IPR001611 GO:0005515
Stsc120971g00003 1007 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 769 980 - -
Stsc120971g00003 1007 SUPERFAMILY RNI-like 76 420 - -
Stsc120971g00003 1007 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 299 964 - -
Stsc120971g00003 1007 Gene3D Phosphorylase Kinase; domain 1 657 768 - -
Stsc120971g00003 1007 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Stsc120971g00003 1007 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Stsc120971g00003 1007 Gene3D Transferase(Phosphotransferase) domain 1 769 989 - -
Stsc120971g00003 1007 SMART LRR_typ_2 189 213 IPR003591 -
Stsc120971g00003 1007 SMART LRR_typ_2 553 577 IPR003591 -
Stsc120971g00003 1007 SMART LRR_typ_2 505 529 IPR003591 -
Stsc120971g00003 1007 SMART LRR_typ_2 141 164 IPR003591 -
Stsc120971g00003 1007 SMART LRR_typ_2 238 262 IPR003591 -
Stsc120971g00003 1007 SMART LRR_typ_2 286 309 IPR003591 -
Stsc120971g00003 1007 SMART LRR_typ_2 359 382 IPR003591 -
Stsc120971g00003 1007 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 338 627 - -
Stsc120971g00003 1007 ProSiteProfiles Protein kinase domain profile. 692 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120971g00003 1007 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 226 331 - -
Stsc120971g00003 1007 Gene3D Ribonuclease Inhibitor 21 80 IPR032675 -
Stsc120971g00003 1007 Gene3D Ribonuclease Inhibitor 81 334 IPR032675 -
Stsc120971g00003 1007 Gene3D Ribonuclease Inhibitor 335 626 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120971g00003 Stsc-Chr120971 10609 15231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120971g00003 21 992 Receptor kinase-like Gene Family AT5G65700 56.609 0.0 1084
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc120971g00003 Pkinase 8.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120971g00003 - - qsa:O6P43_031479 1526.15