Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120970g00011 ATGGCAATTGCACGCACTGGAGTCTACGTGGATGACTATTTGGAGTACGCTAGCACTTTGCCCGCTGAGCTTCAGAGGCTTCTCAATACTGTCCGAGAACTTGATGAACGATCCCAATCTATGATAAACCAGACTAGGCAGCAGACAAAGATGTGTACGGGGATGTCATCACATGGCTCTAAGAAGGGTAACCATGTCAGTGGCCATCACTATAATAACAATCATCATGCAAATGAGGAAGACGAGGCTGCTCTTGAGAAATTGCGAAGGGAAATCGAGGCCAATCAAGATAATGCATTGAGCCTATGTACTGAGAAAGTTTTGTTGGCGCGGCAAGCATATGACTTGATAGATAGTCATGTCAAACGACTTGATGAGGATTTGAACAACTTTGCTGAAGATCTGAAGCAAGAAGGGAAAATACCACCGGATGAACCAGCAATTCTTCCCCCATTGCCGATAGTCCCGAAACCTGAAAAACGCAAGACCTTATATGTAACACCACAGTCAAAGAGGCTTGATTACAGGGATAGAGACTGGGATCGGGAGCATGATAGAGACTTTGAGCTAATGCNNNNNNNNNNTAAAAAGGAGTATGCAACTCCTATGGAGATGGATCAACCTATTGATCCAAATGAACCAACATACTGTGTTTGTCATCAGGTGTCTTTTGGTGACATGATTGCTTGTGACAACGAAAATTGCCAAGGAGGAGAATGGTTCCATTATTCATGTGTCGGCTTAACTCAAGAGACAAGGTTCAAGGGTAAGTGGTATTGTCCAACCTGCAGATTACTACCACAATGCCAATGA 813 0.4342 MAIARTGVYVDDYLEYASTLPAELQRLLNTVRELDERSQSMINQTRQQTKMCTGMSSHGSKKGNHVSGHHYNNNHHANEEDEAALEKLRREIEANQDNALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPIVPKPEKRKTLYVTPQSKRLDYRDRDWDREHDRDFELMXXXXKKEYATPMEMDQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTQETRFKGKWYCPTCRLLPQCQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120970g00011 270 CDD ING_plant 17 128 - -
Stsc120970g00011 270 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 131 IPR024610 -
Stsc120970g00011 270 PANTHER INHIBITOR OF GROWTH PROTEIN 2 264 IPR028651 -
Stsc120970g00011 270 CDD PHD_ING 216 263 - -
Stsc120970g00011 270 SUPERFAMILY FYVE/PHD zinc finger 197 265 IPR011011 -
Stsc120970g00011 270 Coils Coil 24 44 - -
Stsc120970g00011 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 265 IPR013083 -
Stsc120970g00011 270 ProSiteProfiles Zinc finger PHD-type profile. 214 266 IPR019787 -
Stsc120970g00011 270 MobiDBLite consensus disorder prediction 52 77 - -
Stsc120970g00011 270 Coils Coil 78 105 - -
Stsc120970g00011 270 FunFam PHD finger protein ING 208 266 - -
Stsc120970g00011 270 SMART PHD_3 216 264 IPR001965 -
Stsc120970g00011 270 Gene3D - 5 129 - -
Stsc120970g00011 270 SMART ING_2 9 131 IPR024610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120970g00011 Stsc-Chr120970 64188 68420 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc120970g00011 ING 6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120970g00011 - - lang:109339676 471.085