Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120968g00003 ATGGCAAAGCAGAATAGCTGGTTTGGGTGGGTGAAGAGGTTATTCACATCTGAGTCAAACAACAAAAAACCAAAGAAATGGGGATGGGGACTTGGAAGGATAAAGGGGAAACAGTACCCAAAAATCACAGCTCCAAAAAGAGCATCATTGATTGAAGTAAGTGCAGAGCAAAGAAAGCATGCTTTGACAGTGGCAATTGCAACAGCAGCTGCGGCCGAGGCCGCAATTGCTGCTGCACATGCTGCTGCCGAGGTTGTCAAGCTTACTGGTGGCTCTCGGTCTTATTCGTATTTGGCCAAAGGTGACCGGAGCCTGGCCGCCATCAAGATTCAAAGTGCTTACCGGGCACATCTGGCTAGGAAAGCATTAAGAGGACTGAAGGGAGTAACAAAACTGCAAGCTCTAATCCGTGGTCAAGCAGTGAGACGTCGAGTATCCATCGCTTTGAAGAATTCGGCCACCAATGCAGTTAAAATCCCGGGAAAAATCCGTCATATGGAAGAAAGCTACAAAAATGACCAGATAATTTCTATTGCAAAGCACAAGAACAAGTTAGATGAAAAAGAATTGAAGGTACAGCCAGAAGGGCAAAGTCCAATAAGTTGGGATTGTAGGTTGCACTCAAGAGAAGATATTGATGCTACATGGTTGAGAAAGCAAGAGGCTGCTGCCAAAAGAGAGCGCATGAAGCAGTATTCTTTTTCACAAAGGGAAAGAAAACTTCCCCAAATGAGTGAAGAATCTGTTCACAACAAGGAAAATGGGAAAGAGAGAATCCGCACTTTAGGCCAATGGCTAAATAAAGAAGCCAATGACTGGAATATACACCAAAAACGAGATCATGCTTCAAACTTGATCACAAAGAGAAGAGAATCACAAGAAGGACTTAGCCCGCAAATCTCGATCCCCCGGAAATCATTTTCGCACACAAAAAGAAGTTCATTTGGAGCTACAGAGAGCTCCTTACCGAATTCGCCGGTCTTTCCAACTTACATGGCTGTGACAGAATCTAGCAAAGCGAAGGCGAGATCTATAAGCACGCCGAGGCTAAGAACAGGGTGTTTAGACACATGCACCAATAAGGGCGAGTCTCGGAAATAG 1101 0.4487 MAKQNSWFGWVKRLFTSESNNKKPKKWGWGLGRIKGKQYPKITAPKRASLIEVSAEQRKHALTVAIATAAAAEAAIAAAHAAAEVVKLTGGSRSYSYLAKGDRSLAAIKIQSAYRAHLARKALRGLKGVTKLQALIRGQAVRRRVSIALKNSATNAVKIPGKIRHMEESYKNDQIISIAKHKNKLDEKELKVQPEGQSPISWDCRLHSREDIDATWLRKQEAAAKRERMKQYSFSQRERKLPQMSEESVHNKENGKERIRTLGQWLNKEANDWNIHQKRDHASNLITKRRESQEGLSPQISIPRKSFSHTKRSSFGATESSLPNSPVFPTYMAVTESSKAKARSISTPRLRTGCLDTCTNKGESRK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120968g00003 366 PANTHER IQ-DOMAIN 5-RELATED 4 358 - -
Stsc120968g00003 366 SMART iq_5 102 124 IPR000048 GO:0005515
Stsc120968g00003 366 SMART iq_5 126 146 IPR000048 GO:0005515
Stsc120968g00003 366 MobiDBLite consensus disorder prediction 284 326 - -
Stsc120968g00003 366 MobiDBLite consensus disorder prediction 227 256 - -
Stsc120968g00003 366 Pfam Protein of unknown function (DUF4005) 311 351 IPR025064 -
Stsc120968g00003 366 Gene3D - 102 154 - -
Stsc120968g00003 366 MobiDBLite consensus disorder prediction 289 326 - -
Stsc120968g00003 366 Pfam IQ calmodulin-binding motif 127 144 IPR000048 GO:0005515
Stsc120968g00003 366 Pfam IQ calmodulin-binding motif 106 124 IPR000048 GO:0005515
Stsc120968g00003 366 ProSiteProfiles IQ motif profile. 127 154 IPR000048 GO:0005515
Stsc120968g00003 366 ProSiteProfiles IQ motif profile. 103 131 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120968g00003 Stsc-Chr120968 25064 28164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120968g00003 1 357 IQD Protein Family AT5G03960 42.318 4.50e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120968g00003 - - aip:107625415 569.696