Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120968g00001 ATGCATTGGAGTCTATTCATCTTTTTCAACCATGACAATGGAAGAACACAGATAATTGATCTGTTTAATCAGGACAAGTATCTAAACGCAATCCAAACTAGTGCTCCACACCTTTTACGATACTTGGCCACAGCATTCATTGTCAACAAGCGCAGGAGGCCTCAATTCAAAGATTTCATAAAAGTTATTCAACAGGAACAGAATTCATATAAAGACCCTATCACTGAATTTTTGGCTTGTGTTTATGTCAATTATGACTTTGATGGGGCACAAAAGAAGATGCGGGAGTGTGAAGAAGTGATTCTCAATGATCCATTCCTTGGAAAACGAGTTGAAGAAAGCAACTTTTCTACCGTACCATTGAGGGATGAGTTCCTTGAAAATGCTAGGCTATTCATCTTTGAGACATACTGCAGAATACACCAGCGCATTGACATGGCAGTTCTTGCTGAGAAGTTAAATCTGAATTATGAGGAGGCCGAGAGGTGGATTGTGAACCTCATCCGCAGCTCAAAGCTTGATGCCAAAATTGACTCCCAAACAGGAACAGTTATCATGGAACCCAATCATCCCAATGTGTATGAGCAGCTTATTGACCATACCAAGGCCCTTAATGGCCGTACCTACAAGTTAGTTAGTCAACTTTTGGAACATTCACAGGCGCAGGCAGCTCGTTAA 678 0.4115 MHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEESNFSTVPLRDEFLENARLFIFETYCRIHQRIDMAVLAEKLNLNYEEAERWIVNLIRSSKLDAKIDSQTGTVIMEPNHPNVYEQLIDHTKALNGRTYKLVSQLLEHSQAQAAR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120968g00001 225 Gene3D - 18 221 - -
Stsc120968g00001 225 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 222 IPR016650 GO:0003743|GO:0005737|GO:0005852
Stsc120968g00001 225 SUPERFAMILY "Winged helix" DNA-binding domain 120 191 IPR036390 -
Stsc120968g00001 225 ProSiteProfiles PCI domain profile. 7 191 IPR000717 -
Stsc120968g00001 225 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 120 204 IPR000717 -
Stsc120968g00001 225 Pfam PCI domain 73 187 IPR000717 -
Stsc120968g00001 225 FunFam Eukaryotic translation initiation factor 3 subunit E 16 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120968g00001 Stsc-Chr120968 1 1872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120968g00001 1 225 Eukaryotic Initiation Factors Gene Family AT3G57290 88.000 6.76e-152 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120968g00001 K03250 - gmx:100797748 447.203