Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120967g00008 ATGGGTTACCTGAGCAAAGTTTCAAGAACTCTGAGGCAATCAAAATACCTCCTATTGCGCAATTCAAGCATTCATCACCAACAACGTGCACTCTTGTGTTCCCAGTCGCCGAAACAAAACATCAAGGACAAGAGCGCCATTGATTTGAGGCAGTACCCTCCTGAACTCATTCGAAATTTCTCGATCATTGCGCATGTTGATCATGGCAAGTCTACCCTCGCTGATCGACTCCTTGAACTCACTGCTACCATTAAAAAAGGACATGGCCAGCCCCAATATCTTGATAAGTTGCAGGTGGAGAGGGAAAGGGGAATCACAGTTAAAGCACAGACAGCAACAATGTTCTATAAGCACGGTACAAATGGGGAGGATAGTAGTGACGGAAAGGATTCGCCTAGATATTTGGTGAATCTTATTGACACTCCTGGTCATGTGGATTTTAGCTATGAGGTGTCGAGGTCACTAGCAGCTTGTCAAGGCGTGCTTTTGGTTGTTGATGCTGCGCAAGGAGTCCAGGCACAAACCGTTGCTAATTTCTACCTTGCTTTTGAGTCTAACCTGACAATTGTACCTGTAATAAACAAGATTGACCAGCCAACTGCTGATCCTGATCGCATTAAAGCCCAATTGAAATCGATGTTTGATCTTGACCCTAGTGATGCATTGCTAACATCTGCTAAAACTGGAAAGGGTCTTGAGCAAGTCCTTCCAGCTGTTATAGAGCGCATCCCTCCTCCTCCAGGGAAAAGTGATAATTCTCTGCGTATGCTTTTGCTTGATTCATACTATGATGAATACAAGGGGGTAATATGCCATGTTGCTGTTGTTGATGGTATCCTACGCAAGGGGGATAAGATTTCATCTGCTGCTACTGGTCAGTCATATGAAGCTTTGGATATTGGCATCATGCATCCTGAACTTACACCTACTGGAATCTTGCTTACTGGACAAGTTGGTTATGTTGTAAGTGGCATGCGCTCAACCAAAGAGGCCCGTGTTGGAGATACAATTTACCATACTCGAAACACTGTAGAGGCTCTTCCAGGTGTGGATTTCTGGGCTTACTTCACATGGATGTTTTTCATCAACGGCTTGAACAGCAAATTAGAAGTTCAGAATCCTGCTTCATTACCCTCTAATCCCAAGCAACGAGTGACAGCATGTTGGGAGCCTACAGTATTAGCCACTATAATCATTCCTAGTGAGTATGTGGGACCAGTTATCACTCTTTGCTCCGAGCGTAGGGGTCAGCAGTTGGAGTACTCATTCATTGACAGTCAACGGGCATTCATGAAGTATCGCATGCCTTTGAGAGAAATTGTTGTCGACTTCTATAATGAATTGAAGAGCATAACATCAGGCTATGCATCATTTGATTATGAGGATGCAGATTATCAGCAATCTGATCTTGTGAAACTCGATATCCTCCTGAATGGACAACCTGTTGATGCAATGTCAACTATTGTTCATAACATGAAAGCATATCGCGTTGGGCGTGAACTAGTAGAGAAATTGAAGAAAGTCATAGACAGGGTTTCTGCAATGAGGAAGAATGTTCTTGCGAAGTGTTACGGTGGCGATGTTACTCGAAAGCGAAAGCTGTTGGAAAAGCAAAAGGAAGGAAAGAAGCGAATGAAACGTGTTGGCTCCGTTGATATACCACAAGAAGCTTTCCATGAACTATTGAAGGTTTCATAG 1698 0.4358 MGYLSKVSRTLRQSKYLLLRNSSIHHQQRALLCSQSPKQNIKDKSAIDLRQYPPELIRNFSIIAHVDHGKSTLADRLLELTATIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHGTNGEDSSDGKDSPRYLVNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIVPVINKIDQPTADPDRIKAQLKSMFDLDPSDALLTSAKTGKGLEQVLPAVIERIPPPPGKSDNSLRMLLLDSYYDEYKGVICHVAVVDGILRKGDKISSAATGQSYEALDIGIMHPELTPTGILLTGQVGYVVSGMRSTKEARVGDTIYHTRNTVEALPGVDFWAYFTWMFFINGLNSKLEVQNPASLPSNPKQRVTACWEPTVLATIIIPSEYVGPVITLCSERRGQQLEYSFIDSQRAFMKYRMPLREIVVDFYNELKSITSGYASFDYEDADYQQSDLVKLDILLNGQPVDAMSTIVHNMKAYRVGRELVEKLKKVIDRVSAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120967g00008 565 Gene3D - 55 248 IPR027417 -
Stsc120967g00008 565 NCBIfam small GTP-binding protein domain 60 235 IPR005225 GO:0005525
Stsc120967g00008 565 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 55 247 IPR000795 GO:0003924|GO:0005525
Stsc120967g00008 565 CDD EF4_II 254 339 - -
Stsc120967g00008 565 FunFam Elongation factor 4 54 248 - -
Stsc120967g00008 565 Gene3D - 469 515 IPR038363 -
Stsc120967g00008 565 FunFam Translation factor GUF1, mitochondrial 352 467 - -
Stsc120967g00008 565 CDD lepA_C 390 469 IPR035654 -
Stsc120967g00008 565 Gene3D - 358 468 - -
Stsc120967g00008 565 Pfam Elongation factor Tu GTP binding domain 57 244 IPR000795 GO:0003924|GO:0005525
Stsc120967g00008 565 SUPERFAMILY Translation proteins 245 343 IPR009000 -
Stsc120967g00008 565 PANTHER TRANSLATION FACTOR GUF1-RELATED 27 350 IPR006297 GO:0005525
Stsc120967g00008 565 FunFam Translation factor GUF1, mitochondrial 249 347 - -
Stsc120967g00008 565 Pfam Elongation factor G C-terminus 390 475 IPR000640 -
Stsc120967g00008 565 Pfam GTP-binding protein LepA C-terminus 511 563 IPR013842 -
Stsc120967g00008 565 Pfam GTP-binding protein LepA C-terminus 477 511 IPR013842 -
Stsc120967g00008 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 268 IPR027417 -
Stsc120967g00008 565 Gene3D Translation factors 249 347 - -
Stsc120967g00008 565 PRINTS GTP-binding elongation factor signature 137 147 IPR000795 GO:0003924|GO:0005525
Stsc120967g00008 565 PRINTS GTP-binding elongation factor signature 189 198 IPR000795 GO:0003924|GO:0005525
Stsc120967g00008 565 PRINTS GTP-binding elongation factor signature 102 110 IPR000795 GO:0003924|GO:0005525
Stsc120967g00008 565 PRINTS GTP-binding elongation factor signature 59 72 IPR000795 GO:0003924|GO:0005525
Stsc120967g00008 565 SUPERFAMILY EF-G C-terminal domain-like 389 483 IPR035647 -
Stsc120967g00008 565 CDD LepA 58 246 - -
Stsc120967g00008 565 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 95 110 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120967g00008 Stsc-Chr120967 32802 37409 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120967g00008 57 198 Eukaryotic Initiation Factors Gene Family AT1G56070 42.361 1.41e-24 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120967g00008 K21594 - cpap:110820201 763.837