Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc120967g00008 | ATGGGTTACCTGAGCAAAGTTTCAAGAACTCTGAGGCAATCAAAATACCTCCTATTGCGCAATTCAAGCATTCATCACCAACAACGTGCACTCTTGTGTTCCCAGTCGCCGAAACAAAACATCAAGGACAAGAGCGCCATTGATTTGAGGCAGTACCCTCCTGAACTCATTCGAAATTTCTCGATCATTGCGCATGTTGATCATGGCAAGTCTACCCTCGCTGATCGACTCCTTGAACTCACTGCTACCATTAAAAAAGGACATGGCCAGCCCCAATATCTTGATAAGTTGCAGGTGGAGAGGGAAAGGGGAATCACAGTTAAAGCACAGACAGCAACAATGTTCTATAAGCACGGTACAAATGGGGAGGATAGTAGTGACGGAAAGGATTCGCCTAGATATTTGGTGAATCTTATTGACACTCCTGGTCATGTGGATTTTAGCTATGAGGTGTCGAGGTCACTAGCAGCTTGTCAAGGCGTGCTTTTGGTTGTTGATGCTGCGCAAGGAGTCCAGGCACAAACCGTTGCTAATTTCTACCTTGCTTTTGAGTCTAACCTGACAATTGTACCTGTAATAAACAAGATTGACCAGCCAACTGCTGATCCTGATCGCATTAAAGCCCAATTGAAATCGATGTTTGATCTTGACCCTAGTGATGCATTGCTAACATCTGCTAAAACTGGAAAGGGTCTTGAGCAAGTCCTTCCAGCTGTTATAGAGCGCATCCCTCCTCCTCCAGGGAAAAGTGATAATTCTCTGCGTATGCTTTTGCTTGATTCATACTATGATGAATACAAGGGGGTAATATGCCATGTTGCTGTTGTTGATGGTATCCTACGCAAGGGGGATAAGATTTCATCTGCTGCTACTGGTCAGTCATATGAAGCTTTGGATATTGGCATCATGCATCCTGAACTTACACCTACTGGAATCTTGCTTACTGGACAAGTTGGTTATGTTGTAAGTGGCATGCGCTCAACCAAAGAGGCCCGTGTTGGAGATACAATTTACCATACTCGAAACACTGTAGAGGCTCTTCCAGGTGTGGATTTCTGGGCTTACTTCACATGGATGTTTTTCATCAACGGCTTGAACAGCAAATTAGAAGTTCAGAATCCTGCTTCATTACCCTCTAATCCCAAGCAACGAGTGACAGCATGTTGGGAGCCTACAGTATTAGCCACTATAATCATTCCTAGTGAGTATGTGGGACCAGTTATCACTCTTTGCTCCGAGCGTAGGGGTCAGCAGTTGGAGTACTCATTCATTGACAGTCAACGGGCATTCATGAAGTATCGCATGCCTTTGAGAGAAATTGTTGTCGACTTCTATAATGAATTGAAGAGCATAACATCAGGCTATGCATCATTTGATTATGAGGATGCAGATTATCAGCAATCTGATCTTGTGAAACTCGATATCCTCCTGAATGGACAACCTGTTGATGCAATGTCAACTATTGTTCATAACATGAAAGCATATCGCGTTGGGCGTGAACTAGTAGAGAAATTGAAGAAAGTCATAGACAGGGTTTCTGCAATGAGGAAGAATGTTCTTGCGAAGTGTTACGGTGGCGATGTTACTCGAAAGCGAAAGCTGTTGGAAAAGCAAAAGGAAGGAAAGAAGCGAATGAAACGTGTTGGCTCCGTTGATATACCACAAGAAGCTTTCCATGAACTATTGAAGGTTTCATAG | 1698 | 0.4358 | MGYLSKVSRTLRQSKYLLLRNSSIHHQQRALLCSQSPKQNIKDKSAIDLRQYPPELIRNFSIIAHVDHGKSTLADRLLELTATIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHGTNGEDSSDGKDSPRYLVNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIVPVINKIDQPTADPDRIKAQLKSMFDLDPSDALLTSAKTGKGLEQVLPAVIERIPPPPGKSDNSLRMLLLDSYYDEYKGVICHVAVVDGILRKGDKISSAATGQSYEALDIGIMHPELTPTGILLTGQVGYVVSGMRSTKEARVGDTIYHTRNTVEALPGVDFWAYFTWMFFINGLNSKLEVQNPASLPSNPKQRVTACWEPTVLATIIIPSEYVGPVITLCSERRGQQLEYSFIDSQRAFMKYRMPLREIVVDFYNELKSITSGYASFDYEDADYQQSDLVKLDILLNGQPVDAMSTIVHNMKAYRVGRELVEKLKKVIDRVSAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS | 565 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc120967g00008 | 565 | Gene3D | - | 55 | 248 | IPR027417 | - | |
Stsc120967g00008 | 565 | NCBIfam | small GTP-binding protein domain | 60 | 235 | IPR005225 | GO:0005525 | |
Stsc120967g00008 | 565 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 55 | 247 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc120967g00008 | 565 | CDD | EF4_II | 254 | 339 | - | - | |
Stsc120967g00008 | 565 | FunFam | Elongation factor 4 | 54 | 248 | - | - | |
Stsc120967g00008 | 565 | Gene3D | - | 469 | 515 | IPR038363 | - | |
Stsc120967g00008 | 565 | FunFam | Translation factor GUF1, mitochondrial | 352 | 467 | - | - | |
Stsc120967g00008 | 565 | CDD | lepA_C | 390 | 469 | IPR035654 | - | |
Stsc120967g00008 | 565 | Gene3D | - | 358 | 468 | - | - | |
Stsc120967g00008 | 565 | Pfam | Elongation factor Tu GTP binding domain | 57 | 244 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc120967g00008 | 565 | SUPERFAMILY | Translation proteins | 245 | 343 | IPR009000 | - | |
Stsc120967g00008 | 565 | PANTHER | TRANSLATION FACTOR GUF1-RELATED | 27 | 350 | IPR006297 | GO:0005525 | |
Stsc120967g00008 | 565 | FunFam | Translation factor GUF1, mitochondrial | 249 | 347 | - | - | |
Stsc120967g00008 | 565 | Pfam | Elongation factor G C-terminus | 390 | 475 | IPR000640 | - | |
Stsc120967g00008 | 565 | Pfam | GTP-binding protein LepA C-terminus | 511 | 563 | IPR013842 | - | |
Stsc120967g00008 | 565 | Pfam | GTP-binding protein LepA C-terminus | 477 | 511 | IPR013842 | - | |
Stsc120967g00008 | 565 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 54 | 268 | IPR027417 | - | |
Stsc120967g00008 | 565 | Gene3D | Translation factors | 249 | 347 | - | - | |
Stsc120967g00008 | 565 | PRINTS | GTP-binding elongation factor signature | 137 | 147 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc120967g00008 | 565 | PRINTS | GTP-binding elongation factor signature | 189 | 198 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc120967g00008 | 565 | PRINTS | GTP-binding elongation factor signature | 102 | 110 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc120967g00008 | 565 | PRINTS | GTP-binding elongation factor signature | 59 | 72 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc120967g00008 | 565 | SUPERFAMILY | EF-G C-terminal domain-like | 389 | 483 | IPR035647 | - | |
Stsc120967g00008 | 565 | CDD | LepA | 58 | 246 | - | - | |
Stsc120967g00008 | 565 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 95 | 110 | IPR031157 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc120967g00008 | Stsc-Chr120967 | 32802 | 37409 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc120967g00008 | 57 | 198 | Eukaryotic Initiation Factors Gene Family | AT1G56070 | 42.361 | 1.41e-24 | 106 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc120967g00008 | K21594 | - | cpap:110820201 | 763.837 |