Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120967g00007 ATGGAGGATATGTCAAAAATATTTAGTTCATATGGTTTAGATATAGAAGAGAAGAGAGTTAGTTCCACTATCACTGAAGATTATGTTACTAAGGGTGGTAAACTCAAATCTACTGAAGCTGAAATGGGTGAGGGGAAAGAAGAAAATGGCAGGTTGAAGATGATCATAGAGAGAGTAGAAGAGAATCATCACTCTCTTCAGCTACAATTCTTCGATATCCTTCACAAAGAAGCATCCAAAGAAGTTGTAACTGATTCTGATTTAGCTACAAATACAAGTGGTGATGGAGCTGAAGAGGAACATGAACTTGTTTCACTTTGCCTTGGAAGAAATCCAGGTAAGAATAACAAAGATGCTGCAAGAATTGGAAACAACTCCGACAAGGTTAACAAAGAAAATGGAGAGTTGGAAAAAGCATACTTAACTCTTGGGTTAGACTCTAAAGCTGTGTTGCCAAAGGACTCAGCAGAAGCAACTTTGTCATCAATAAGACAGAAATACCAAATGAAAGTGAAGAATAGTTCAAATGATGAAAGTTCAGATCAAATTCCAGCTAAGAGAGCCAGGGTTTGTGTTAGAGCAAGATGTGATTCTCCTACGATGAATGATGGATGTCAATGGAGAAAATATGGACAGAAAATAGCAAAAGGGAATCCATGTCCGCGAGCATACTATCGTTGCACAGTTGCGCCGGCATGCCCGGTTAGGAAACAGGTTCAAAGATGTGCTGAAGACTTATCCATCTTGATCACAACATATGAAGGGACACATAACCATCCACTTCCATTTTCTGCATCAGCCATGGCTTCCACCACTTCTGCAGCAGCTTCCATGTTTATTTCAGGTTCCTCGGAGAGTCGCAGTTCTCCATTTTTTGGGAATGTGTCAACACCACATAACGGTGTATTTGGTCAGCAATTTGATCAATCAAGAGCAACAAAAAATGTCTTGCTACCAAGCAATAATGTAACTCTAGACCTCACTGCTTCTGCTTCAAACACTTTATTACCTTCAACCATGATGATGACACCATCATTTTGGGGTAAGGAATCTGCTAAACCTTTCACAATGCCTACTCCTATTGCGGAGAAAACACACATAATAAGGCCAGTTATGTTGAGAAACTCCTCAAGTTGGGGTAACCATTTTTATGAAGAATGCATGAAGAATCAAATTCTTCATCCTCCAAAGGATTCTTTTTTAGCAGAAACAATAACAAAAGCAATTAAAAAAGATCCAAGTCTTCATTCTGTGATAGCTGCTGCAGTTTCATCTATTGTGGGGCAACAAGGATATTCATCCAGTTGCAACAACCGAGAAGGGACTGACATCCTTATACCTTCAACCCAATTGGGATCTTCCATTCCCTTGAACCAAGGTAACAAAGGATACATACAAGGGTACTTCAAAAGATTGTTGTCCTCAAGTTCTAGTTCTGGAGACATGCTTCCATAG 1455 0.3952 MEDMSKIFSSYGLDIEEKRVSSTITEDYVTKGGKLKSTEAEMGEGKEENGRLKMIIERVEENHHSLQLQFFDILHKEASKEVVTDSDLATNTSGDGAEEEHELVSLCLGRNPGKNNKDAARIGNNSDKVNKENGELEKAYLTLGLDSKAVLPKDSAEATLSSIRQKYQMKVKNSSNDESSDQIPAKRARVCVRARCDSPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCAEDLSILITTYEGTHNHPLPFSASAMASTTSAAASMFISGSSESRSSPFFGNVSTPHNGVFGQQFDQSRATKNVLLPSNNVTLDLTASASNTLLPSTMMMTPSFWGKESAKPFTMPTPIAEKTHIIRPVMLRNSSSWGNHFYEECMKNQILHPPKDSFLAETITKAIKKDPSLHSVIAAAVSSIVGQQGYSSSCNNREGTDILIPSTQLGSSIPLNQGNKGYIQGYFKRLLSSSSSSGDMLP 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120967g00007 484 SMART WRKY_cls 201 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120967g00007 484 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 20 438 IPR044810 GO:0003700
Stsc120967g00007 484 FunFam probable WRKY transcription factor 31 186 263 - -
Stsc120967g00007 484 ProSiteProfiles WRKY domain profile. 196 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120967g00007 484 SUPERFAMILY WRKY DNA-binding domain 194 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120967g00007 484 Gene3D WRKY domain 186 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120967g00007 484 Pfam WRKY DNA -binding domain 202 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120967g00007 Stsc-Chr120967 30710 32741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120967g00007 42 476 WRKY Transcription Factor Family AT5G15130 40.083 4.04e-76 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc120967g00007 WRKY 5.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120967g00007 - - adu:107486739 672.93