Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120966g00001 ATGGCAGACCCAACAGCAGCCGTATACGATTTCCTCAACCAAACTGCTGATTCTTCACCTCCTTCTTCAAAGAAATCAAACCAACTAACTCAATCCTTTCACCCTCACCACCACCAACAACCACCTTCTAGAACATTCCAATGCCATTTCTGTAACCGCAAGTTCTACACTTCTCAAGCACTCGGCGGCCACCAGAACGCTCACAAGCTCGAACGAGCTGCCGCCAGAAGAACCGCCGTCACCATCCCTCTCCAGCACCCACCGCCGCCTCACTCGCTCTTTCCGTCAATGGAGTCCTCTCCTCCTTTCTTTCTCAGGAACAGCAACGATCTCAACACCAGCAACAAGGCGGCCATGGAAGTAGCTGATTATCATGGAGGCGGTGGCGGTGGTGGTGGACGTTTCTTCGGAAACCCTTACTGGCTTGAAATGGATCCTCCGCCGGCATTGCAGCAGTTTCATCAGCAGATGAATCATGATCTTCATCATCATCATGCTTCTTCGGTGGGATTCTTCCATGGCGGTGGTGGTGAAGGTGGTTCTTCAGGGTCTTCATCTTCCACTTCAACTTCAACTACTCATCATCAGCAGTATCAGTATCAATATCATGGATCTGGTTCTGCTGCTCCTGCTCCGGCGTCTTCCTCCGATGCTTCTGATAACGTTAACCTCGATCTCACACTTCGCTTATGA 693 0.5065 MADPTAAVYDFLNQTADSSPPSSKKSNQLTQSFHPHHHQQPPSRTFQCHFCNRKFYTSQALGGHQNAHKLERAAARRTAVTIPLQHPPPPHSLFPSMESSPPFFLRNSNDLNTSNKAAMEVADYHGGGGGGGGRFFGNPYWLEMDPPPALQQFHQQMNHDLHHHHASSVGFFHGGGGEGGSSGSSSSTSTSTTHHQQYQYQYHGSGSAAPAPASSSDASDNVNLDLTLRL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120966g00001 230 PANTHER ZINC FINGER PROTEIN JAGGED 15 230 IPR045320 GO:0003700
Stsc120966g00001 230 MobiDBLite consensus disorder prediction 179 223 - -
Stsc120966g00001 230 SUPERFAMILY beta-beta-alpha zinc fingers 43 73 IPR036236 -
Stsc120966g00001 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Stsc120966g00001 230 MobiDBLite consensus disorder prediction 166 230 - -
Stsc120966g00001 230 Gene3D Classic Zinc Finger 22 84 - -
Stsc120966g00001 230 MobiDBLite consensus disorder prediction 13 44 - -
Stsc120966g00001 230 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120966g00001 Stsc-Chr120966 3917 4609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120966g00001 44 77 C2H2 Transcription Factor Family AT5G14010 82.353 2.95e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120966g00001 - - ahf:112759108 247.284