LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120965g00004	ATGTCTGATGATATGCTTGTGCATTTCTCTTCCAATTCCTCCAACCAATCTGACCAGTCCCTTCCGACGAAGATTGCGAAGCTCGAAGCTCGAATGGTGGGCAAGGCTTCCTCCACTGCTGCTCAGCAGCCAGGTTGGTCCTCTCTCCCTTCAGCTGCGAAATTTGGAGGAGCTGCTGAGGATTTAGCTGAGGCATCTAGTTCCAGTGATTCTGATGATGGTAATGGTGACGAATTCTTAATTCAAGCCAACACGCAGAAGCGGCAAAAACTTCAAGAAGATGACAACTCTAATGTTTTTGAACATCTTGAGGTTATGATTGATGGAAGACAAACTAGTTCGGAGCCTATTGAGGCAAAAATAAGTAATGATGTGAATAGAAAGAAACATGGTCGTGGAAGAGGGAATTCTGGTTCAGGAAGGGGCCGGGGTTCCAGATCTAATGATCAGACCAGAACACCAATACCTCCTCCAACTGCTTTGACCTCAAATGGCCAGACTGAGAATTTATACCATAAGGATGGAAGACTCAAAGATCAACTTCGTAATGATAATTTTGCTTCATTAGAGGAGGAGGTTACATCTTTACGTGCAAAGGTTTTAGCATTGGAGGAGGACTTGCGTAAATCAAAACAAGAGACCTCTGAATATCAAAATCTTTGTCGACAGTTAGAAAAGGAACTGAAGGACCTGACGGATCAAGAACAAAAAATGAAGCCAAAGCGGACAAAAATAATATCCGATTTGCTGATATCAGTTTCAAAGGCTGAGAGACAAGAGGCCAGGCTGAAGGTGCGACAAGACTCACTGAGACTTGGAAATATTGGTGTAATCAGAGCTGGAACTGTCTTATCCGAAAACTGGGAAGATGGTCAAGCATTAAAGGATCTCAATGCCCAGCTTAAACAACTAATAGAAACAAAGGAGGCAATTGAACGTCAGCGTAAATTATTGAAGAAAAAGCAATCTGATAAGGGGGATGCAACTGATTCAGAGGCTGGATTACCAGAAGATGTTCTCATTCATGATGAAATTTATAAATCTCGACTGGCTAGCCTCAAACGGGAAGAAGAAGTTATTTTGCGCGAGAGGGATCGCCTTGATCTAGAGAAGGGCAGGTTGATGCGTGAAATGAAACGTATAAGGGACGAAGAAGGTTCACGGTTTAGCAACTTCCAGATTCTAAACCATCGTTATGCCCTTCTAAACCTTCTTGGAAAGGGAGGGTTCAGTGAGGTTTACAAGGCTTTTGATTTAGTAGAGCATAGATACGTTGCCTGCAAGCTTCACGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAGAGTTACATGCGGCATGCAATTCGGGAGTATAATATTCACAAGTCCTTGGTGCATCATCACATTGTTCGTTTTTGGGACATATTTGAGATTGATCAAAATACGTTCTGCACTGTTCTAGAGTATTGTAGTGGGAAAGATCTTGATGCGGTTCTTAGAGCAACACCTATATTGCCAGAGAAGGAGGCTAGAGTCATTCTGGTTCAGATTTTTCAAGCCCTCATATACATGAATAAAAGAACACCTTATATTATCCATTATGATTTAAAGCCGGGTAATGTTCTGTTTGACGAGCTTGGTTTTGCAAAATTAACTGATTTTGGTCTCAGCAAGATAGTGGAGGATGATGTTGGATCCCTGGGCATGGAGCTTACTTCCCAGGGAGCTGGAACATATTGGTATTTGCCTCCTGAATGCTTTGACATCACCAAAACGCCTTATATTTCATCGAAGCTTGATGTTTGGTCGGCTGGCATTATGTTCTATCAAATGCTCTTTGGTAGACGTCCTTTTGGCCATGACCAAACTCAAGAGAGAATACTTCGTGAAGACACAATTATTAAGGCACGCAAGGTTGACTTTCCTTCTAGGCCTGCTGTTTCTAATGAGGCAAAGGATTTCATTCGTCGGTGTCTAACGTATAACCAGATTGAGAGACCAGATGTATTAACAATTGCTCAAGATCCATATCTCACATACTCAAAGAAGTAA	2034	0.4208	MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKASSTAAQQPGWSSLPSAAKFGGAAEDLAEASSSSDSDDGNGDEFLIQANTQKRQKLQEDDNSNVFEHLEVMIDGRQTSSEPIEAKISNDVNRKKHGRGRGNSGSGRGRGSRSNDQTRTPIPPPTALTSNGQTENLYHKDGRLKDQLRNDNFASLEEEVTSLRAKVLALEEDLRKSKQETSEYQNLCRQLEKELKDLTDQEQKMKPKRTKIISDLLISVSKAERQEARLKVRQDSLRLGNIGVIRAGTVLSENWEDGQALKDLNAQLKQLIETKEAIERQRKLLKKKQSDKGDATDSEAGLPEDVLIHDEIYKSRLASLKREEEVILRERDRLDLEKGRLMREMKRIRDEEGSRFSNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYMRHAIREYNIHKSLVHHHIVRFWDIFEIDQNTFCTVLEYCSGKDLDAVLRATPILPEKEARVILVQIFQALIYMNKRTPYIIHYDLKPGNVLFDELGFAKLTDFGLSKIVEDDVGSLGMELTSQGAGTYWYLPPECFDITKTPYISSKLDVWSAGIMFYQMLFGRRPFGHDQTQERILREDTIIKARKVDFPSRPAVSNEAKDFIRRCLTYNQIERPDVLTIAQDPYLTYSKK	677

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120965g00004	677	MobiDBLite	consensus disorder prediction	1	23	-	-
	Stsc120965g00004	677	MobiDBLite	consensus disorder prediction	64	87	-	-
	Stsc120965g00004	677	Coils	Coil	294	324	-	-
	Stsc120965g00004	677	Coils	Coil	350	384	-	-
	Stsc120965g00004	677	MobiDBLite	consensus disorder prediction	110	170	-	-
	Stsc120965g00004	677	SMART	serkin_6	399	672	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120965g00004	677	CDD	STKc_TLK	398	671	-	-
	Stsc120965g00004	677	SUPERFAMILY	Protein kinase-like (PK-like)	391	673	IPR011009	-
	Stsc120965g00004	677	Coils	Coil	186	237	-	-
	Stsc120965g00004	677	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	525	537	IPR008271	GO:0004672\|GO:0006468
	Stsc120965g00004	677	ProSiteProfiles	Protein kinase domain profile.	399	672	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120965g00004	677	Gene3D	Transferase(Phosphotransferase) domain 1	390	677	-	-
	Stsc120965g00004	677	Pfam	Protein kinase domain	400	672	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120965g00004	677	MobiDBLite	consensus disorder prediction	140	170	-	-
	Stsc120965g00004	677	FunFam	Serine/threonine-protein kinase TOUSLED	390	677	-	-
	Stsc120965g00004	677	MobiDBLite	consensus disorder prediction	58	97	-	-
	Stsc120965g00004	677	ProSitePatterns	Protein kinases ATP-binding region signature.	405	428	IPR017441	GO:0005524
	Stsc120965g00004	677	PANTHER	MIXED LINEAGE PROTEIN KINASE	11	676	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120965g00004	Stsc-Chr120965	18621	25177	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120965g00004	382	677	MAP Kinase Kinase Kinase	AT3G13530	26.667	5.55e-26	112

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TLK	Stsc120965g00004		Pkinase	4e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120965g00004	K08864		-	gmx:100805168	1113.98