Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120964g00006 ATGGATTTCTGGCCAGAGTTTCTTGCCTCAAGTTGGGGAAAAGAGTTTGTAGCAGGAGGGTTTGGAGGGATTGCTGGAATAGTATCTGGTTATCCATTAGACACCATAAGAATAAGGCAACAAAGCTCAAACATTTTTGGTTCATCATCATCATCAGCATTCAGTATTCTTAGAAATGCTATTGCTAAAGAAGGACCAGCTTCTCTTTACCGTGGCATGGGTGCACCTTTGGCCTCTGTTACATTTCAGAATGCTGCAGTTTTCCAAACTTATGCAGTTCTCTCAAGAGTTTTTGACAAATCTGTTTCTCCCAATGACCCTCCTTCCTACAAGGGAGTAGCATTAGGAGGAGTTGGCACAGGTGCTCTCCAGAGCATAATTCTTTCCCCTGTAGAACTGATTAAGATTCGTCTTCAACTGCGCCGCGGCGCAAACCACTTGACAGAACCTCAAAAGGGTCCTGTTATGGTTGCCAAGAACATATGGAGAAAGGAGGGACTCAAAGGAATCTACAGAGGACTAGGCATAACTGTGATAAGAGATGCACCTGCTCATGGTATCTATTTCTGGACATATGAATACATGAGAGAACAGCTTCACCCAGGATGTAGAAAAAGTGGCCAAGAAAGCTTGACAACTATGCTAACAGCAGGTGGGTTAGCTGGAGTAACAAGTTGGATTTCTTGCTACCCTTTTGATGTTGTGAAAACAAGGTTACAGGCACAGACACCAGATTCTTTGAAATACAATGGCATTGTTGATTGCATTAGAAAGAGTGTTAAGGAAGAAGGGCATGCTGTTCTATGGCGTGGACTAGGGACTGCAGTTGCTAGAGCTTTTGTGGTGAATGGTGCTGTGTTTGCAGCTTATGAGATAACACTAAGGCTATTGTTTAGTAATGGAAATATTCAAATGCAGGAAACTATCTAA 930 0.4269 MDFWPEFLASSWGKEFVAGGFGGIAGIVSGYPLDTIRIRQQSSNIFGSSSSSAFSILRNAIAKEGPASLYRGMGAPLASVTFQNAAVFQTYAVLSRVFDKSVSPNDPPSYKGVALGGVGTGALQSIILSPVELIKIRLQLRRGANHLTEPQKGPVMVAKNIWRKEGLKGIYRGLGITVIRDAPAHGIYFWTYEYMREQLHPGCRKSGQESLTTMLTAGGLAGVTSWISCYPFDVVKTRLQAQTPDSLKYNGIVDCIRKSVKEEGHAVLWRGLGTAVARAFVVNGAVFAAYEITLRLLFSNGNIQMQETI 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120964g00006 309 Gene3D Mitochondrial carrier domain 15 307 IPR023395 -
Stsc120964g00006 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 297 - -
Stsc120964g00006 309 SUPERFAMILY Mitochondrial carrier 11 291 IPR023395 -
Stsc120964g00006 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 97 IPR018108 -
Stsc120964g00006 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Stsc120964g00006 309 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Stsc120964g00006 309 PRINTS Mitochondrial carrier protein signature 171 189 IPR002067 GO:0055085
Stsc120964g00006 309 PRINTS Mitochondrial carrier protein signature 218 240 IPR002067 GO:0055085
Stsc120964g00006 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 108 198 IPR018108 -
Stsc120964g00006 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 209 296 IPR018108 -
Stsc120964g00006 309 Pfam Mitochondrial carrier protein 11 100 IPR018108 -
Stsc120964g00006 309 Pfam Mitochondrial carrier protein 115 199 IPR018108 -
Stsc120964g00006 309 Pfam Mitochondrial carrier protein 210 300 IPR018108 -
Stsc120964g00006 309 FunFam Mitochondrial arginine transporter BAC2 11 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120964g00006 Stsc-Chr120964 26614 29249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120964g00006 1 300 Antiporters AT1G79900 70.333 1.06e-145 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120964g00006 K15109 - gmx:100812056 485.723