Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120964g00004 ATGAACAGACAAGGGCAGCGATCTGGTGCGTCGGGGGTCCACCAACACCGTCACTACTCCGAAAACCTTCTCGAACCTTCCTCCAACGCTAGCTGGCTTCACCCCTCTTCCACTTTCATTCCTCCTCTTCAGGATTATAATTTGTATGGTGGGGGAGGAAGCAGAATGTATAGGAACAGCGTTCAGAGGAGCTTCAGTGGAGGGAGTGATTATTACTATGACGCGGAGGCATCCGCGCTGCCCAAGAAGAAGTATGGGGAGGAAGTTTCGCCGGCCGATTTCAGCCCGGGCCTTTTGGATATCCATTCATTTGATACTGAGCTTCTCCCTGAGATGCCGGCTTCTGATGTATCTGATGCTGCCCTGTATCAGCCTACCCTTGATAGAGGGTTTGATGATGCTGAGCCTTACATGTTGAGTAAGCAAAGTGGCAGAAGTCGCACACTTGACAACAACAACTTCATGAGTAATGTTTCTTCTACTGATAAGGAGAAAGCTAGCTCTGTAGCAAAGATTAAAGTTGTGGTTCGCAAAAGACCACTTAACAAGAAGGAAATAGCAAAGAATGAGGAAGACATTATAGAGACAATATCTAATTCTTTAACAGTGCATGAGACTAAACTTAAGGTTGACCTAACTCAGTATGTGGAGAAGCATGAATTTGTTTTTGATGCTGTCTTGAATGAGGAGGTTACAAATGATGAGGTATATCGTGAAACAGTGGAGCCCATAGTGCCAATAATTTTTCAACGAACTAAGGCGACTTGTTTTGCATATGGGCAAACAGGAAGTGGGAAAACTTACACAATGAAGCCACTGCCTCTAAAAGCTTCAAGGGACATCTTGAGATTGATGCATCATACTTACAAGAATCAGGGGTTTCAGTTGTTTGTTAGTTTCTTTGAAATATATGGTGGAAAGCTTTTTGATCTGCTTAATGATCGGAAAAAACTGTGCATGAGAGAGGATGGTAAGCAACAAGTTTGCATTGTTGGTTTGCAAGAGTACCAAGTATCCGATGTAGAGATGATCAAGGAGCTGATAGACCAAGGAAATGCCACACGAAGTACTGGCACCACTGGTGCGAACGAGGAATCTTCAAGGTCACATGCTATACTTCAGCTTGCTATCAAGAGGTCAACTGATGGCAATGGATCAAAGCCTCCTCGTGTCGTTGTTATTGGCAAGCTCTCCTTCATTGATCTTGCTGGAAGTGAACGTGGAGCAGATACCACAGATAATGACAAACAAACAAGAATAGAAGGTGCTGAGATCAATAAAAGCTTACTTGCCCTGAAGGAGTGCATAAGAGCTCTTGATAACGATCAGGGACACATCCCATTCAGAGGCAGTAAATTGACTGAAGTTTTAAGGGATTCATTTGTTGGTAATTCCCGCACTGTTATGATATCATGCATATCGCCAAGCTCTGGTTCATGTGAACATACTCTCAATACATTAAGATATGCTGACAGAGTAAAAAGCCTATCAAAGGGTCACAATTCTAAGAAGGATACTTTATCTTCAATCAACCTTAGGGAATCTACTATGATTCCTATATCTTCTTTTACTGCGTCTACCTATGAGGATCGTGTGGCTGATGCATCACTGGAAGATAATGATGTTGATGAACTTAGCCCTCCTGAAGAGTACTATGAGGAGATGAAACCATCATTAAAGAAATATGGAAAGATAGAGCCGTCGTATGGAGTGACAGATGACAAATTAAAGAAGCAGAATAGTCAGATCAAGTGGAAGGACCTCTCAAATGTTGAACCTAAAACTGTACATTCAGATGATGATTTAAATGCCCTCTTAAAGGAGGAGGAAGATCTTGTAAATGCTCACCGGAAACAAGTGGAGGAGACAATGAATATTGTTAGAGAGGAAATGAACCTCTTGGTTGAAGCAGATCAACCAGGGAATCAGCTGTCTGATTATGTTACAAAGCTAAATGCTGTTCTAACTCAGAAAGCTGCTGGTATCTTGCAGTTGCAAACCCGTTTAGCTCATTTTCAAAATCGTTTAAAGGAGCATAATGTTCTGGTTTCATCTAATGGCAACTAA 2067 0.4209 MNRQGQRSGASGVHQHRHYSENLLEPSSNASWLHPSSTFIPPLQDYNLYGGGGSRMYRNSVQRSFSGGSDYYYDAEASALPKKKYGEEVSPADFSPGLLDIHSFDTELLPEMPASDVSDAALYQPTLDRGFDDAEPYMLSKQSGRSRTLDNNNFMSNVSSTDKEKASSVAKIKVVVRKRPLNKKEIAKNEEDIIETISNSLTVHETKLKVDLTQYVEKHEFVFDAVLNEEVTNDEVYRETVEPIVPIIFQRTKATCFAYGQTGSGKTYTMKPLPLKASRDILRLMHHTYKNQGFQLFVSFFEIYGGKLFDLLNDRKKLCMREDGKQQVCIVGLQEYQVSDVEMIKELIDQGNATRSTGTTGANEESSRSHAILQLAIKRSTDGNGSKPPRVVVIGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDNDQGHIPFRGSKLTEVLRDSFVGNSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGHNSKKDTLSSINLRESTMIPISSFTASTYEDRVADASLEDNDVDELSPPEEYYEEMKPSLKKYGKIEPSYGVTDDKLKKQNSQIKWKDLSNVEPKTVHSDDDLNALLKEEEDLVNAHRKQVEETMNIVREEMNLLVEADQPGNQLSDYVTKLNAVLTQKAAGILQLQTRLAHFQNRLKEHNVLVSSNGN 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120964g00004 688 Coils Coil 606 637 - -
Stsc120964g00004 688 PRINTS Kinesin heavy chain signature 360 377 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc120964g00004 688 PRINTS Kinesin heavy chain signature 251 272 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc120964g00004 688 PRINTS Kinesin heavy chain signature 446 467 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc120964g00004 688 PRINTS Kinesin heavy chain signature 396 414 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc120964g00004 688 CDD KISc_KIF2_like 171 494 - -
Stsc120964g00004 688 ProSitePatterns Kinesin motor domain signature. 395 406 IPR019821 GO:0003777|GO:0005524|GO:0007018
Stsc120964g00004 688 SMART kinesin_4 169 502 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc120964g00004 688 PANTHER KINESIN-RELATED PROTEIN 6 558 683 IPR027640 GO:0003777|GO:0007018
Stsc120964g00004 688 Pfam Kinesin motor domain 177 495 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc120964g00004 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 496 IPR027417 -
Stsc120964g00004 688 Gene3D Kinesin motor domain 145 499 IPR036961 -
Stsc120964g00004 688 ProSiteProfiles Kinesin motor domain profile. 171 496 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Stsc120964g00004 688 FunFam Kinesin-like protein 151 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120964g00004 Stsc-Chr120964 17655 22504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120964g00004 170 496 Calmodulin-binding Proteins AT5G65930 33.828 6.57e-44 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120964g00004 K10393 - gmx:100799100 1044.26