Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120963g00008 ATGCTGGCTGTTTCTACTCTGAGGACTACAAGAAGAGATGAAGAAATGGAGAGCTTCAACTCAATTGGGCCCTCATTAAAGGATGGTGAATTTGCCGAACTCTCAGAAGCAAGTTTGTTGGAGAGCATCAATTTTGATGATTTCTTTGTTGGTATCAATGTTGATGGGGATGTGTTGCCAGATTTGGAGCTGGATGTCATCCACATCTTCCCCGAATTCTCTACTGATAATAACCCTAACCCATCTGGTGATAGAGGCCGAGAGGAATCTTCAATTGAGAATTGCTTTGGCAAAGACAATGAATTTGCTACTAATTCAAAGAAGAATGAAGAATATATAGCAGAGAAAACTAACAATCAATTGGATTTTAGTCAGGACTCAGAGAAAAGTGGAGGGGAAGAGATAGTGAGTGAAAGAGATAACTCCATAGTTGTGAATCCTCCAACAAAGGAAGGTGGAAAGAGGAGAAAATCATCATCTCAGTCCAAGAGTAATAATCCTCAAGGGAAGATTAGAAAAGTCAAGGTGGATTGGACCCCAGAGTTGCATAGAAGATTTGTACAAGCTGTGGAACAACTTGGAGTAGATAAGGCAGTACCTTCTAGGATTTTGGAGATTATGGGAATTGATTGCCTCACTCGCCATAACATTGCCAGCCATCTTCAAAAATATAGATCCCATAGGAAACATTTACTTGCACGTGAAGCAGAAGCAGCAAATTGGAATCAAAGAAGACACATCTATGGAGGAGGAGGAGGATTAGGGAAGAGAAATGTGACTCCATGGCTACCACCACCACCAACAATGGGTTTCCCTCCAATTACTTCAATGCACCATTTTAGACCACTGCATGTGTGGGGACATCCCTCCATCGACCAATCTTTTATACACATGTGGCCTACAAATCTTACACATTCGCGGTCGCCTCTGCCTCCTCAGCCGGCGTGGGTGTCTCCGGCAGGTCCGCATCCCTTGCCTCCTGACCCTTCCTCATTTTGGCATCCGCAGCACCAACCGGCTCCAAACACACTAACACCAGGAACACCATGTTTTCCACAGCCTCTGACAACAACGCGGTATGGAGGTCCAGCTATGGCAGGCATTATTGGAGCAACAGGAGCACATGGTATGTACAAAGCAGCAGATTCTACCATTAATGGCGTCTCTAGCCCCATCCCCATCTTTGACTTCCATCCGTCAAAGGAGAGCATAGATGCAGCAATTGGAGATGTTCTAGCAAAGCCATGGCAGCCACTACCTCTTGGGCTTAAAGCTCCAGCACTTGACAGTGTTCTAACTGAATTACAAAGACAAGGAGTTCCAAATATTCCACCCTCTTGTGCTTGA 1347 0.4484 MLAVSTLRTTRRDEEMESFNSIGPSLKDGEFAELSEASLLESINFDDFFVGINVDGDVLPDLELDVIHIFPEFSTDNNPNPSGDRGREESSIENCFGKDNEFATNSKKNEEYIAEKTNNQLDFSQDSEKSGGEEIVSERDNSIVVNPPTKEGGKRRKSSSQSKSNNPQGKIRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAANWNQRRHIYGGGGGLGKRNVTPWLPPPPTMGFPPITSMHHFRPLHVWGHPSIDQSFIHMWPTNLTHSRSPLPPQPAWVSPAGPHPLPPDPSSFWHPQHQPAPNTLTPGTPCFPQPLTTTRYGGPAMAGIIGATGAHGMYKAADSTINGVSSPIPIFDFHPSKESIDAAIGDVLAKPWQPLPLGLKAPALDSVLTELQRQGVPNIPPSCA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120963g00008 448 MobiDBLite consensus disorder prediction 72 101 - -
Stsc120963g00008 448 NCBIfam myb-like DNA-binding domain, SHAQKYF class 173 227 IPR006447 GO:0003677
Stsc120963g00008 448 Gene3D - 171 231 - -
Stsc120963g00008 448 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 447 IPR044825 GO:0003700|GO:0045893
Stsc120963g00008 448 MobiDBLite consensus disorder prediction 307 327 - -
Stsc120963g00008 448 MobiDBLite consensus disorder prediction 116 174 - -
Stsc120963g00008 448 Pfam Myb-like DNA-binding domain 176 225 IPR001005 -
Stsc120963g00008 448 SUPERFAMILY Homeodomain-like 171 230 IPR009057 -
Stsc120963g00008 448 FunFam Two-component response regulator 169 232 - -
Stsc120963g00008 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 229 IPR017930 -
Stsc120963g00008 448 MobiDBLite consensus disorder prediction 312 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120963g00008 Stsc-Chr120963 61109 67171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120963g00008 14 290 G2-like Transcription Factor Family AT5G44190 43.416 9.60e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc120963g00008 Myb_DNA-binding 5.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120963g00008 - - aip:107629821 508.449