Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120962g00010 ATGGCCACCAAAATCACCACCATTGTAACAACACTCTTATTATTATTAGCTCTCTTCACAGCAACAACACAAGCCAGAATCCCTGGCGTCTACACCGCCACCGCATGGCAGACCGCCCACGCCACATTCTACGGCGGCAGCGACGCCTCCGGAACAATGGGAGGTGCATGTGGCTATGGAAACTTGTACAGCCAAGGATACGGTGTGAACACGGCGGCGCTGAGCACTGCACTCTTCAACAATGGCTTCAGCTGCGGAGCATGTTTCGAGATAAAGTGCGCGGATGATCCCAACTGGTGCCATGCGGGTTCGCCCTCGATATTCGTGACGGCAACAAACTTCTGCCCTCCGAACTACGCTCTGCCAAGTGACAATGGAGGTTGGTGCAACCCTCCGAGGCCACACTTCGATCTCGCCATGCCCATGTTCCTCAAGATCGCTCAGTACCGCGCTGGTATTGTACCCGTCTCTTACCGCAGGGTTCCATGCCGCAAGCAAGGTGGGATGAGATTCACAATCAACGGTTTCCGTTACTTCAATTTGGTATTGATCACCAACGTGGCGGGAGCAGGGGATATCATGAGGGCTAGCGTGAAGGGTTCAAAGACAGGGTGGATGAGCATGAGCCGCAACTGGGGTCAGAATTGGCAATCAAACTCTGTTTTGGTTGGTCAGTCACTGTCCTTCAGGGTCACAGCCAGTGACCGTCGCACTTCCACTTCTTGGAACATTGTACCCTCTAACTGGCAATTTGGCCAAACCTTCACCGGCAAGAACTTTAGGGTCTAG 789 0.5336 MATKITTIVTTLLLLLALFTATTQARIPGVYTATAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCADDPNWCHAGSPSIFVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDIMRASVKGSKTGWMSMSRNWGQNWQSNSVLVGQSLSFRVTASDRRTSTSWNIVPSNWQFGQTFTGKNFRV 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120962g00010 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Stsc120962g00010 262 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Stsc120962g00010 262 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Stsc120962g00010 262 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Stsc120962g00010 262 PRINTS Expansin signature 93 104 IPR002963 GO:0009664
Stsc120962g00010 262 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Stsc120962g00010 262 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Stsc120962g00010 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Stsc120962g00010 262 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Stsc120962g00010 262 PANTHER EXPANSIN-A15 12 260 IPR002963 GO:0009664
Stsc120962g00010 262 Gene3D - 169 260 IPR036749 -
Stsc120962g00010 262 Gene3D - 21 164 IPR036908 -
Stsc120962g00010 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 168 IPR007112 -
Stsc120962g00010 262 FunFam Expansin 168 260 - -
Stsc120962g00010 262 Pfam Lytic transglycolase 71 158 IPR009009 -
Stsc120962g00010 262 CDD DPBB_EXPA_N 36 163 - -
Stsc120962g00010 262 FunFam Expansin 25 164 - -
Stsc120962g00010 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Stsc120962g00010 262 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Stsc120962g00010 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Stsc120962g00010 262 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Stsc120962g00010 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Stsc120962g00010 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Stsc120962g00010 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Stsc120962g00010 262 SUPERFAMILY PHL pollen allergen 165 257 IPR036749 -
Stsc120962g00010 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 257 IPR007117 -
Stsc120962g00010 262 SMART dpbb_1 71 158 IPR007112 -
Stsc120962g00010 262 SUPERFAMILY Barwin-like endoglucanases 35 186 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120962g00010 Stsc-Chr120962 55046 57501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120962g00010 1 262 Expansin Gene Family AT2G39700 82.443 5.13e-166 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120962g00010 - - gmx:100809018 493.426