Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120962g00006 ATGGCAATTGGGTTGATGGAAGTGCAGCTTCTCAAAGCAAAGGACCTCAAAGTCACTGATTTCTTTGGTAAAATAGATCCATATGTTGTGATGCAATACAAAGGGCAAGAGAAGAGGAGCACTGTTGCTAATGGGCAAGGAAGAAACCCAGTTTGGAATGAGAAATTTATGTTCAGAGCAGAGTATCCAAGTGGATCTGGGGATCAATACAAGCTCATCCTCAAAATCATGGACAAGGACACTTTTTCTAAGGATGATTATCTTGGCCAAGCCATAATCTATGTTAAAGATTTATTGGCCCAAGGGATAGAGAATGGAGGAGCTAAGCTACAATCTCTCAAGTACAGAGTAATTGGTGAAAACAACTCATATTGTGGTGAAATTGATGTTGCTATAACTTTTACCCCTAAGATGAAATTCGAAGACTATCTAATGGAGAAAAGCCAAGAGCCCCAGAAAAGAGGAGAGCTTGAGAAAGAGGTTGTGATATTGCAAGCTCAGTTGAAGGGAGAGCAAGCAATGAATAGGGTCTTACGTTGTGCTCTTCAAGGACCTGTTTTCTCTCTTCCACTCATTCCATCTGTTTTTCCACCTGAGGTCTATGAGCTTCTTGAAGAATTGGCAATGGTTGAGGAGGAGATAGTTTTGCTTGAAAGAAAAGTTAAGGAACTGAAACTTAGATTGTACCAAGAGAGAGAATTGGAAATAATTCAGCACAGAAAGAAGCTTAATAATAATAAAGCATGTAAGAAGCAGTTCCAAGGTTCATCAGAATATGGACCAATGACTACTGAGCATAGATACAGTTCACAGAATTATCAAGTGTTCGCCAAAGGAAGAAAATCAAGAGATAGAAGAGCTTCTCTAAGTTCATCATGGGATATACATACCCTACTTTCCATGCCAAGAAAGTCAAATGAATATGAAGCAGCAAGAAGGAGCACTCAAAAGATCCCAAGACAGTTTCCAATGCAAATAGAAACTTCCATTGAGAAACCAAATGAATTGTCAGAGGAACTTGTGAAATGTCTGATTGGGATTTTTCTTGAACTGAACCGGGCATCATCATCATCATCATTGGACAGAAACAGAATAGAAGAATCTGAAACTGTGCCAAGACTCATTACTCTCTCATCATGCATGAAGTCCACAGGGTTCATTTCAAAGACCTCATTCAGCTGCAAGACACCTTCATCATTCCATTCAAATGGCAATAATGCCTCTTACTATGATCCTTATGGAACTTCCTCAGATTTAGATTGCACTGCAAGGGATGTTGGACCTTACAAGCACTTGATTCAAGTCACCAGCAGTTCATTGGATATTAACCGTTTCTCTCAGTGCTTACCAGCATTCAAAAAATTGAGGAGCTTGATGCATAAGCTATGTGATGTGGATTTAAGTTTCTTGAGCTACAAGCAGAAACTGGCATTCTGGATAAACATATACAATGCCTGCATAATGAATGCATTTCTAGATCATGGGCTTCCTTCAACAAATGATAAACTGTTGTCTCTTATGAATAAGGCAGCAATGAATGTAGGTGGGATAGTACTCAATGCTCTGGCTATCGAACACTTCATTCTTCGGCATCCTTATGAATCGAACCAGGGTCCAGTGGACGAGAAGGAAGTGTTATTGAGGCATGCTTATGGTCTGGGGTATCCAGAACCCAACATCACTTTTGCTCTATGTCGCGGCACGTGGTCGTCGCCGGCGCTAAGGGTGTACAGTGCAGAGGAAGTGGTGAACGAATTGGGGAGGGCAAAAGTGGAATACTTGGAAGCTTCAGTGGGAATTACAAACAAGAGGAAGATAATAGTGCCAAAGCTATTGCAATGGCATATGGAGGATTTTGCAGATGACATGGAGTCACTACTAGAATGGATTTACAGCCAATTGCCACGTTCTGGATCATTCAAGAGAGCCATGATGGAGTGCTTAATAAGAGAGACTAAGTACCCTATTTCTAAAATGGTAGAACTTCAACCATATGAATCTGAATTCCGATATCTCATACCCATTTGA 2028 0.4053 MAIGLMEVQLLKAKDLKVTDFFGKIDPYVVMQYKGQEKRSTVANGQGRNPVWNEKFMFRAEYPSGSGDQYKLILKIMDKDTFSKDDYLGQAIIYVKDLLAQGIENGGAKLQSLKYRVIGENNSYCGEIDVAITFTPKMKFEDYLMEKSQEPQKRGELEKEVVILQAQLKGEQAMNRVLRCALQGPVFSLPLIPSVFPPEVYELLEELAMVEEEIVLLERKVKELKLRLYQERELEIIQHRKKLNNNKACKKQFQGSSEYGPMTTEHRYSSQNYQVFAKGRKSRDRRASLSSSWDIHTLLSMPRKSNEYEAARRSTQKIPRQFPMQIETSIEKPNELSEELVKCLIGIFLELNRASSSSSLDRNRIEESETVPRLITLSSCMKSTGFISKTSFSCKTPSSFHSNGNNASYYDPYGTSSDLDCTARDVGPYKHLIQVTSSSLDINRFSQCLPAFKKLRSLMHKLCDVDLSFLSYKQKLAFWINIYNACIMNAFLDHGLPSTNDKLLSLMNKAAMNVGGIVLNALAIEHFILRHPYESNQGPVDEKEVLLRHAYGLGYPEPNITFALCRGTWSSPALRVYSAEEVVNELGRAKVEYLEASVGITNKRKIIVPKLLQWHMEDFADDMESLLEWIYSQLPRSGSFKRAMMECLIRETKYPISKMVELQPYESEFRYLIPI 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120962g00006 675 Pfam C2 domain 6 102 IPR000008 -
Stsc120962g00006 675 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 138 IPR035892 -
Stsc120962g00006 675 Coils Coil 200 227 - -
Stsc120962g00006 675 Pfam Protein of unknown function, DUF547 469 594 IPR006869 -
Stsc120962g00006 675 CDD C2_putative_Elicitor-responsive_gene 4 128 - -
Stsc120962g00006 675 Pfam Leucine-zipper of ternary complex factor MIP1 150 231 IPR025757 -
Stsc120962g00006 675 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Stsc120962g00006 675 PANTHER EXPRESSED PROTEIN 137 674 - -
Stsc120962g00006 675 Gene3D C2 domain 2 137 IPR035892 -
Stsc120962g00006 675 SMART C2_3c 5 107 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120962g00006 Stsc-Chr120962 30148 36421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120962g00006 3 110 C2H2 Transcription Factor Family AT4G21160 34.259 8.95e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120962g00006 - - adu:107457838 937.562