Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120962g00005 ATGCGGAGGCACAGTCCAGGATACTACAGTCCCCCGAGGAGAGGCTACGGCGGCAGGGGACGATCTCCTCCGCCGCCACCTCCTCCCTCGAGGAGGGGCTACGGTGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCGGGAGGCGCGGCAGGGATAGCAACAATGGAAGCCTCCTTGTTCGCAACATTCCCCTCGATTGCCGACCCGAGGAGCTTCGTGTCCCCTTCGAGCGGTTCGGACCCGTTCGTGATGTCTACATTCCCAAGGATTATTACTCAGGAGAACCTCGAGGCTTTGCGTTTGTGCAATTTGTGGATTCTTATGATGCTTCAGAGGCACAGTACCATATGAACAGACAAATCTTTGCTGGAAGGGAAATATCTGTTGTTGTCGCTGCTGAAACAAGAAAAAGACCAGAGGAAATGCGCCAAAGGACTAGGAGAGGACCAGCGAACTATGGGGGGCGAAGGTCTTATTATGGGCGCTCTCGGTCTCGCTCAGTATCACGCTCTCCACCTTATCACGGTGGTTCTAGAGGTAGATATCGCTCAAGATCATACTCTCCTGCCCCAAGAAGGCAAAGTGATTACTCTATTTCCCCTAGAAGGCAAGCAGAACATTCTAGATCACCTCGATCGCCGAGAGGCCCTCCTAGGGAGCGAGATGCTGATCAGAAGCGAAGATCATATACTCCAGATTTTGGCAACGGTGTTGATCAGAATGAAAGCAATGGCTATCCAGAGAAATCTACATACAAGTCTGAGGCTGATGAAGGGCAGTGGAAGTCATCTGGACGTAGACCATCGAGGTCACCACCTGGATCCAGATCTAGATCAAGGTCTCCTGATTTGTCTCCCAGACATTGA 864 0.5301 MRRHSPGYYSPPRRGYGGRGRSPPPPPPPSRRGYGGGGGGGGGGGGRRGRDSNNGSLLVRNIPLDCRPEELRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDSYDASEAQYHMNRQIFAGREISVVVAAETRKRPEEMRQRTRRGPANYGGRRSYYGRSRSRSVSRSPPYHGGSRGRYRSRSYSPAPRRQSDYSISPRRQAEHSRSPRSPRGPPRERDADQKRRSYTPDFGNGVDQNESNGYPEKSTYKSEADEGQWKSSGRRPSRSPPGSRSRSRSPDLSPRH 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120962g00005 287 MobiDBLite consensus disorder prediction 264 279 - -
Stsc120962g00005 287 MobiDBLite consensus disorder prediction 135 287 - -
Stsc120962g00005 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723
Stsc120962g00005 287 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 47 185 - -
Stsc120962g00005 287 MobiDBLite consensus disorder prediction 233 249 - -
Stsc120962g00005 287 MobiDBLite consensus disorder prediction 18 32 - -
Stsc120962g00005 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 126 IPR000504 GO:0003723
Stsc120962g00005 287 SMART rrm1_1 56 129 IPR000504 GO:0003723
Stsc120962g00005 287 Gene3D - 47 171 IPR012677 -
Stsc120962g00005 287 MobiDBLite consensus disorder prediction 1 56 - -
Stsc120962g00005 287 SUPERFAMILY RNA-binding domain, RBD 51 162 IPR035979 GO:0003676
Stsc120962g00005 287 MobiDBLite consensus disorder prediction 198 228 - -
Stsc120962g00005 287 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 55 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120962g00005 Stsc-Chr120962 24049 26778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120962g00005 28 117 Eukaryotic Initiation Factors Gene Family AT3G11400 38.889 2.92e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120962g00005 K12900 - gmx:100804294 329.331