Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120962g00003 ATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAGGCGTACAAGGACACAGTGAATGGTTGACCGAGATAAATTACTTGGGGCAGCTGCATCATCCTAATCTTGTGAAACTGGTTGGTTTCTGCTTGGAAGATGATCAAAGGCTTTTGGTGTATGAGTTCTTGACCAAGGGCAGTTTGGATAATCATTTATTTAGGAGGGCTTCTTATGTTCAACCGCTTTCTTGGAACATTCGGATAAAGGTTGCCCTTGATGCTGCTAAGGGTCTAGCTTTTCTCCACAGCGAAGAAGCAAAAGTGATATACAGAGACTTCAAAACTTCTAATATATTGCTTGATTCGAGTTACAACGCGAAACTTTCTGATTTCGGCTTGGCAAAGGATGGACCAGCAGGCGATAAGAGCCATGTCTCTACAAGGGTGATGGGCACATATGGCTATGCTGCACCTGAATACATGGCCACAGGTCACTTGACCAAGAAGAGTGATGTATACAGCTTCGGAGTGGTTCTCCTAGAAATCATGTCCGGCAAACGTGCCCTCGACAACAACAGGCCATCCCGGGAGCAGAACTTGATAGAATGGGCCAAGCCTTACCTCAGCAGCAAGCGAAGGATCTTCCAAGTCATGGACGCTCGAATCGAAGGCCAATACACGCTGCGAGAGGTGACGAAAGTAGCTAACCTCGCGATTAGATGCCTATCGGTGGAGCCGAGGTTTCGGCCGAAGATGGAGGAGGTGGTGAGGATATTGGAACATTTGCATGATTCGGAGGAGAAAAGCGGAGAGGGAAGCTCTAGAGGTCAAGATTTGAAAAGGAATGGGCATAGGCATAGCTCAGGAAGCAGTGGGACTAGACAACATAGAAGAAAACATGAAACAGTTACAACAAACAAACAAAAAGAATGA 906 0.4636 MVIAVKRLNQEGVQGHSEWLTEINYLGQLHHPNLVKLVGFCLEDDQRLLVYEFLTKGSLDNHLFRRASYVQPLSWNIRIKVALDAAKGLAFLHSEEAKVIYRDFKTSNILLDSSYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDNNRPSREQNLIEWAKPYLSSKRRIFQVMDARIEGQYTLREVTKVANLAIRCLSVEPRFRPKMEEVVRILEHLHDSEEKSGEGSSRGQDLKRNGHRHSSGSSGTRQHRRKHETVTTNKQKE 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120962g00003 301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Stsc120962g00003 301 MobiDBLite consensus disorder prediction 255 276 - -
Stsc120962g00003 301 SUPERFAMILY Protein kinase-like (PK-like) 2 255 IPR011009 -
Stsc120962g00003 301 MobiDBLite consensus disorder prediction 255 301 - -
Stsc120962g00003 301 PANTHER OS01G0588500 PROTEIN-RELATED 2 254 - -
Stsc120962g00003 301 PIRSF ILK 1 266 - -
Stsc120962g00003 301 MobiDBLite consensus disorder prediction 285 301 - -
Stsc120962g00003 301 Gene3D Transferase(Phosphotransferase) domain 1 54 276 - -
Stsc120962g00003 301 Gene3D Phosphorylase Kinase; domain 1 1 53 - -
Stsc120962g00003 301 Pfam Protein tyrosine and serine/threonine kinase 3 250 IPR001245 GO:0004672|GO:0006468
Stsc120962g00003 301 ProSiteProfiles Protein kinase domain profile. 1 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120962g00003 301 FunFam Probable serine/threonine-protein kinase PBL8 54 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120962g00003 Stsc-Chr120962 13471 16096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120962g00003 1 260 Glycoside Hydrolase AT3G07070 50.575 2.41e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc120962g00003 PK_Tyr_Ser-Thr 2.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120962g00003 - - gmx:100775335 491.886