Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120962g00002 ATGGGTTGCTGCTTCAGTGCAAGGATCAAAGCTGAGAGCCCTCCACGAAATGGTGTGAGTTCAAAGGAAAGTAGCAGAGAAGATTGTGTGAGTGGTTTAAGCAGCAAAGTCTCAGTAGTTGCTCCTCCGACTCCTCGGTCCGAGGGCGAGATCTTGAAATCCTCCAATTTGAAGAGCTTCACCTTTGCTGAACTTAAAACCGCAACGAGGAACTTTCGTCCCGACAGTGTGGTGGGAGAAGGTGGTTTCGGTTCTGTATTCAAGGGGTGGATCGATGAGCAGACACTTGTACCGGTTAAACCCGGTACCGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAGGCGTACAAGGACACAGTGAATGGTTGACCGAGATAAATTACTTGGGGCAGCTGCATCATCCTAATCTTGTGAAACTGGTTGGTTTCTGCTTGGAAGATGATCAAAGGCTTTTGGTGTATGAGTTCTTGACCAAGGGCAGTTTGGATAATCATTTATTTAGGAGGGCTTCTTATGTTCAACCGCTTTCTTGGAACATTCGGATAAAGGTTGCCCTTGATGCTGCTAAGGGTCTAGCTTTTCTCCACAGCGAAGAAGCAAAAGTGATATACAGAGACTTCAAAACTTCTAATATATTGCTTGATTCGAGTTACAACGCGAAACTTTCTGATTTCGGCTTGGCAAAGGATGGACCAGCAGGCGATAAGAGCCATGTCTCTACAAGGGTGATGGGCACATATGGCTATGCTGCACCTGAATACATGGCCACAGGTCACTTGACCAAGAAGAGTGATGTATACAGCTTCGGAGTGGTTCTCCTAGAAATCATGTCCGGCAAACGTGCCCTCGACAACAACAGGCCATCCCGGGAGCAGAACTTGATAGAATGGGCCAAGCCTTACCTCAGCAGCAAGCGAAGGATCTTCCAAGTCATGGACGCTCGAATCGAAGGCCAATACACGCTGCGAGAGGTGACGAAAGTAGCTAACCTCGCGATTAGATGCCTATCGGTGGAGCCGAGGTTTCGGCCGAAGATGGAGGAGGTGGTGAGGATATTGGAACATTTGCATGATTCGGAGGAGAAAAGCGGAGAGGGAAGCTCTAGAGGTCAAGATTTGAAAAGGAATGGGCATAGGCATAGCTCAGGAAGCAGTGGGACTAGACAACATAGAAGAAAACATGAAACAGTTACAACAAACAAACAAAAAGAATGA 1218 0.4729 MGCCFSARIKAESPPRNGVSSKESSREDCVSGLSSKVSVVAPPTPRSEGEILKSSNLKSFTFAELKTATRNFRPDSVVGEGGFGSVFKGWIDEQTLVPVKPGTGMVIAVKRLNQEGVQGHSEWLTEINYLGQLHHPNLVKLVGFCLEDDQRLLVYEFLTKGSLDNHLFRRASYVQPLSWNIRIKVALDAAKGLAFLHSEEAKVIYRDFKTSNILLDSSYNAKLSDFGLAKDGPAGDKSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDNNRPSREQNLIEWAKPYLSSKRRIFQVMDARIEGQYTLREVTKVANLAIRCLSVEPRFRPKMEEVVRILEHLHDSEEKSGEGSSRGQDLKRNGHRHSSGSSGTRQHRRKHETVTTNKQKE 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120962g00002 405 CDD STKc_IRAK 78 357 - -
Stsc120962g00002 405 MobiDBLite consensus disorder prediction 389 405 - -
Stsc120962g00002 405 FunFam Probable serine/threonine-protein kinase PBL8 158 373 - -
Stsc120962g00002 405 ProSiteProfiles Protein kinase domain profile. 72 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120962g00002 405 Gene3D Phosphorylase Kinase; domain 1 47 157 - -
Stsc120962g00002 405 FunFam Serine/threonine-protein kinase BIK1 40 157 - -
Stsc120962g00002 405 PANTHER OS01G0588500 PROTEIN-RELATED 32 358 - -
Stsc120962g00002 405 MobiDBLite consensus disorder prediction 359 405 - -
Stsc120962g00002 405 MobiDBLite consensus disorder prediction 359 380 - -
Stsc120962g00002 405 ProSitePatterns Protein kinases ATP-binding region signature. 78 110 IPR017441 GO:0005524
Stsc120962g00002 405 SUPERFAMILY Protein kinase-like (PK-like) 44 354 IPR011009 -
Stsc120962g00002 405 Gene3D Transferase(Phosphotransferase) domain 1 158 380 - -
Stsc120962g00002 405 Pfam Protein tyrosine and serine/threonine kinase 76 354 IPR001245 GO:0004672|GO:0006468
Stsc120962g00002 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120962g00002 Stsc-Chr120962 13076 16096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120962g00002 50 357 Glycoside Hydrolase AT3G07070 49.515 1.02e-107 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc120962g00002 PK_Tyr_Ser-Thr 8.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120962g00002 - - gmx:100775335 654.44