Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120961g00014 ATGACAAATCTCTCGAAGCTCTTCAACCATGTTTGCGGCAGAATAATAATCCTATTAGCATACCTGTTATTAGAATTAATCATCTTAATTAAGAAGCTAGAATCATCATTTACAGCTCCAATTGCTAAGATTAAGTACCTGAGAACCATCGAAGAGAAAAACCCAACGATTCCGTACACAAAGGGGATGAAGCTACGTCACGTGCAGTGCACGGTGTGCTTGTCGGAGTTCAACCAAGGGGAGAAAGTTAGGAGCCTCAAATGCCAACACGTGTTTCACAGGGACTGCTTGGACACGTGGCTCAAAGGTTACCGCGCCACGTGTCCGTTGTGTAGGGTAAAAGTGTTGCCGGATGATGTTGTCTTCAACCGTGGTGTGCTTCGAAACCAACAAGGTTCTCATGTCAATGGTGGTGAGCGTCTTCCATTCTTTTTGTCCGCGTTACATGTTAGGAATTAG 459 0.4466 MTNLSKLFNHVCGRIIILLAYLLLELIILIKKLESSFTAPIAKIKYLRTIEEKNPTIPYTKGMKLRHVQCTVCLSEFNQGEKVRSLKCQHVFHRDCLDTWLKGYRATCPLCRVKVLPDDVVFNRGVLRNQQGSHVNGGERLPFFLSALHVRN 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120961g00014 152 SMART ring_2 70 111 IPR001841 -
Stsc120961g00014 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 117 IPR013083 -
Stsc120961g00014 152 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Stsc120961g00014 152 PANTHER - 1 150 - -
Stsc120961g00014 152 FunFam Putative RING zinc finger domain superfamily protein 42 117 - -
Stsc120961g00014 152 Pfam Ring finger domain 69 112 IPR001841 -
Stsc120961g00014 152 SUPERFAMILY RING/U-box 52 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120961g00014 Stsc-Chr120961 88337 89240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120961g00014 69 121 C3H Transcription Factor Family AT1G15100 52.830 1.76e-16 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120961g00014 K16282 - gmx:102661897 145.206