Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120961g00003 ATGGAATCATCCTCTCCACGTTCCGAATCCCAAATGGACCCTCTCTCAACCCCTTCCTTCTCTACTCTCAACGATCTCTGCCATGACCTCACCTCCCTACAGGACCTCGCCAATCGCGGCGCGTGGCGCTCCGTCATCGACAAGGTCTCACGCGCCAGGGCCCTCAACCTCCTCCAAAACCCTCACGACCATCTCACCTACCTTGCCTATAACGCCCTTGCCTTCGCTAAACTGCGCCGTTTCAACGAAGCCTCCGCAGAGCTCGATTCCATGGAAGATCTCGATAGTCACCACTACCGCTACGAAACCTACCCCAAAGTCTACCCTAACCGAACCGGTTCCATGGTCCCCTTCTCCCTTCGCTGGCTCCACGCCCTTCTTCCCATCAAATTAGGGCACAGAAATCAAGGCGTGGATCGCTTGTACACTCTCCTCGATTTCGTCCGCGACAAGATTCGGGACAAGGAGAAGAACAATCTAGAACATTCGGTTCAGATCTGGAAGAAGAGAGAGGTATTCGTTGTTAATTGCATAATTGGGAACCATTTGAGTCACAAGGAGTTCACCGTGTGCTTGAGCTTGTTGAATGAGTTGCTTTCGCGTGATTCTTTGGATCTGTTGCTGGTTTCGCAGCTTGGCTATGTTCAGTTGCAGATTGGGGACTTGGAAGGTGCGAAGGTTTCGTTCTCCAAGGTTGAGGATATGGTAGAGGAAGCAAAGAAGGGTAATGGCAATGGTTCGTTGTTGTTGAATGAGATTGAGATGATGAACCTTGTCAACAGAAACAAGGCTTTGGTGTATTTGGTTGGGAAGGATTATGTCTCTGCTGTGAGAGAGTATGAGGAGTGCATTGAGAGGGATGGTTCTGATGTTGTTGCCTTGAACAACAAGGCGTTGTGTTTGATGTATCTGAGGGATTTGTCTGATTCCATCAAGGTACTCGAGAATGCACTCGAGACGGTTCCCACCATGGCACTCAACGAGACGCTTGTTGTTAACTTGTGTAGCATGTATGAGCTGGCTTATGTGAATCACTCGGATATTAAGAGGACGCTGAGCAATTGGATCGCCCGTGTTGCCCCCGATGACTTTGATGCAACTTGCACTCGGACAACTTCTTTGCAAACCCTATTGTGGACGGTGAACGACAGAAGAAGCTCATCAAAGAAATTGTCATCAAAGAAATTGCCACATCATCAACTCTCCAAGCCCACCGCCCACCTGCAAAACTTCTTGAACATTCTGGTGGATGAGAAGCGCATCGATCTGCAAAAGGCGATTGCAAAGGAGTATGAGTTCGTGTACAGCACGATCATAGATACTGAGTTAGCGATGGTGAAGCTGGAGTCGCAGCACTGGGCATAG 1365 0.493 MESSSPRSESQMDPLSTPSFSTLNDLCHDLTSLQDLANRGAWRSVIDKVSRARALNLLQNPHDHLTYLAYNALAFAKLRRFNEASAELDSMEDLDSHHYRYETYPKVYPNRTGSMVPFSLRWLHALLPIKLGHRNQGVDRLYTLLDFVRDKIRDKEKNNLEHSVQIWKKREVFVVNCIIGNHLSHKEFTVCLSLLNELLSRDSLDLLLVSQLGYVQLQIGDLEGAKVSFSKVEDMVEEAKKGNGNGSLLLNEIEMMNLVNRNKALVYLVGKDYVSAVREYEECIERDGSDVVALNNKALCLMYLRDLSDSIKVLENALETVPTMALNETLVVNLCSMYELAYVNHSDIKRTLSNWIARVAPDDFDATCTRTTSLQTLLWTVNDRRSSSKKLSSKKLPHHQLSKPTAHLQNFLNILVDEKRIDLQKAIAKEYEFVYSTIIDTELAMVKLESQHWA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120961g00003 454 Gene3D Tetratricopeptide repeat domain 174 353 IPR011990 GO:0005515
Stsc120961g00003 454 SUPERFAMILY TPR-like 195 326 IPR011990 GO:0005515
Stsc120961g00003 454 PANTHER D-ALANYL-D-ALANINE CARBOXYPEPTIDASE 5 369 - -
Stsc120961g00003 454 SMART tpr_5 291 324 IPR019734 GO:0005515
Stsc120961g00003 454 SMART tpr_5 206 239 IPR019734 GO:0005515
Stsc120961g00003 454 SMART tpr_5 257 290 IPR019734 GO:0005515
Stsc120961g00003 454 FunFam Trafficking protein particle complex subunit 12 174 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120961g00003 Stsc-Chr120961 8038 12349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120961g00003 406 454 Primary Pumps ATPases AT4G09650 47.170 1.07e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120961g00003 K20309 - gmx:100779691 558.91