Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120960g00009 ATGAGTGACAGAGGCAGAAACACAGTGAGGTCGCTAGCCAGGCTAGCCGACGAAATAAGGGGGAGAGTGCTAGGGGGTTTGTACCAGGTTTATGGACGAAGACGGAATGGTGGTCATGATGTGAGGCGGAGGTCCATAACGAACGCTGATGGGCACTGGACTAGGATGGAGAAGAAGACCCACACAGTGTTTGTTGATAACCTGCCTAAAAGAGTGACGAATGGATCTTTGTTCAGATATTTTGGAAGAATGGGAGGTGTTGTTGACATATACATCTCATGGAAACAAAGACAGGGTAATAAAGGTGGTGCCATACATGCCATTGATAAGATAAATGGCGTGATATGGGGTGGTAAGAGGTTATTAGTGAAGACTGCAGACTATGGAAGAACAGAGGAAGATCGAAGAATGTTTGTTCGAGATAGGCGTATGTACGTGAGTAACCATGAGAGGCTAGTCATATGGGAAAAGAAGCATGGCACAAATCAGCATTTGCATGAGGGCAGAGGCAAAAAGGATGAGGGTGATAACGCTATAGGAGCGACAAAGGTGAGAAGATGCGTAGAGGTAATGTCATTGGTGGAGCAGAAGGAGTTACTGGACAGAAGTGTGCTGGTGGAGAGCTTTCAGCCGATTAAGTTTGGTAACTTGGTGGTAAGTTTGGAGAACCACTGGGAGGAATATGGGAAGATTGAGGTGAGAGACCTTGGCCCTAGAAAATGCATTTTGACGTTTGCTTCCGTTAGTGCTAGGGATGCAGCTCTTGCAAATGGTGTGCTACTTGACTATGTAGATGAGGCAAGAGTATACTAG 813 0.4613 MSDRGRNTVRSLARLADEIRGRVLGGLYQVYGRRRNGGHDVRRRSITNADGHWTRMEKKTHTVFVDNLPKRVTNGSLFRYFGRMGGVVDIYISWKQRQGNKGGAIHAIDKINGVIWGGKRLLVKTADYGRTEEDRRMFVRDRRMYVSNHERLVIWEKKHGTNQHLHEGRGKKDEGDNAIGATKVRRCVEVMSLVEQKELLDRSVLVESFQPIKFGNLVVSLENHWEEYGKIEVRDLGPRKCILTFASVSARDAALANGVLLDYVDEARVY 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120960g00009 270 Gene3D - 34 180 IPR012677 -
Stsc120960g00009 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 128 IPR000504 GO:0003723
Stsc120960g00009 270 CDD RRM_SF 63 124 - -
Stsc120960g00009 270 SMART rrm1_1 62 124 IPR000504 GO:0003723
Stsc120960g00009 270 SUPERFAMILY RNA-binding domain, RBD 43 136 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120960g00009 Stsc-Chr120960 64156 65054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120960g00009 38 165 Eukaryotic Initiation Factors Gene Family AT1G71770 31.034 4.09e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120960g00009 K13126 - ahf:112794598 121.324