LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc120957g00002	ATGGAGAGGGTTGCAGAGCTGAAGGCACATCCACGGACCTTGCCTACCCTGGTGGAGTTATCAAATGCACACATGGCTGCAGCGAAAGAGGCTAGTCAGAGACGAAATGGGCCGGAGGTTGCAAGTGTCCGTGTGAATTATGGAAGAGAAGTGAATCAGTCGTCAAAAGCCAGGGATATGCCTGCTATGCGTCTGGCTTCCATCAGAGAAGTGGCTCAGTTGTCAAATGCACGATTCTTTTTAGAAAGAGATGATATGGTCTTTGAATCTCGAAGCTCTGAAGAATCTCTCTGCTTTGCCCTGGCACCACCTGGAACGTGGAAAGGAAAGGCCTCTTTACTAGAGCCGGAAGAACTGGTGCTTGATTTCGAGTCATTGAAGGAAAGCAATGATTCATTTGAGGACAGTGGTTCTAGTTCATTTGCCGGTGCCAGTCATCCCCAGGAACCTGTTGATACAGATCTTATGAGAACAGTTTATGTACCAATAGGTCAAGGAAAATCCGAGGCTAGATGCTTAATGAAGAGCATGTCCATGAAGGGTCCTTTCATAGAAGATCTCTCAATTCATGTTCCTGCCAAAAAACCAAGCCCAGCTGTTGTGTCCCCTGAAGAAAGTCTTGTTGAAGAAATTAATGACACGAGACATGTATCCTCACCAACTTGGGGTTCTCGAGCATCACAGAATACTGAGAACTCTATACTCCCTCCAGATTCTGAGGAAAAGGAATGTGTTTGGGATGCTTCTTTGCCTCCTAGTGGCAATGTAAGTCCACTTAGTAGCATTGATAGCACCGGTGTTGTCAGAGCAATGAGCATTGTTAATAGTTGTGCAAGTACATATCGGAGTGATGCAATGACTAGTGATGGAATGCTTAGTATAGACAGAAACTGCGATAGTACTAAAGGAAGTATAAGGGGGGATTCACTGGAGAGTGCGAAAACTAGTGCTAGTCGCCCAAGTGATAGCAGCGGCCTTAGTGATGACAGCAACTGGAGCAACATTACCGGTAGTGCCAACAAGCCTCACAAAGGAAATGACCCTAGGTGGAATGCTATCCTTGCCATCCGATTAAGGGATGGAATTTTAGGCATGAGTCATTTTAGGTTACTCAAACGACTTGGCTGTGGCGATATTGGAAGTGTGTATCTATCAGAGCTGAGTGGAACACGCTGTTATTTTGCGATGAAAGTTATGGATAAAGCATCCCTAGCAGTCCGAAAGAAGCTCACGAGAGCACAGACAGAAAGGGAGATACTGCAATTGCTGGATCATCCATTTCTACCGACTTTGTATACACATTTTGAGACTGACAGATTCTCCTGTTTGGTGATGGAATACTGTCCAGGCGGTGATTTACACACTTTAAGGCAGCGTCAACCTGGAAAACATTTCTCGGAATATGCTGCACGCTTTTATGCTGCGGAGGTGTTGCTGGCTCTTGAATATCTTCACATGCTTGGAGTTGTATATAGGGACCTTAAACCTGAAAATGTAAGTGATGGCGATCCCAAACGTGGTGGTGCATTCTGTGTCCAACCTGTTTGTATTGAGCCGTCATCGGCATGCATCCAACCTGCATGTTTTATTCCGCGACTCTTCCCTCAGAAAAACAAAAAGTCACGGAAACCCAGAGTGGAGCCTGGGTTGCCATCAAGTACAATGCCAGAGCTTGTAGCCGAGCCAACTCAAGCTCGGTCTATGTCCTTTGTTGGAACCCACGAATATCTTGCGCCCGAGATTATTAAAGGAGAAGGTCATGGCAGTGCAGTTGATTGGTGGACATTTGGAATATTCTTGCATGAGCTATTATATGGCAAAACCCCTTTCAAAGGATCAGGAAACAGAGCTACACTCTTCAATGTAGTAGGCCAGCAGCTAAGGTTTCCTGAATCACCAGCAACTAGTTATGCCAGCAGGGACCTGATCCGGGGATTGCTGGTGAAGGAGCCACAGAATCGTCTTGGGGTTAAGAGAGGCGCAACCGAGATCAAGCAGCACCCCTTCTTTGAAGGTGTGAACTGGGCATTGATTAGGTGTAGCACGCCACCGGAGGTGCCAAGACCAGTGGAAACTGAGCCGCCACCGAAGTTCGGACCCATTGAGAATACTGCAGCTGCAGCTGCTGCTGCTGCAGTTGGCAGCACTAGCAAGAGGATGGTAGGAACTGAGATGAGGCCTGAGGGTAAATTTCTGGACTTTGAGTTCTTTTAG	2214	0.4679	MERVAELKAHPRTLPTLVELSNAHMAAAKEASQRRNGPEVASVRVNYGREVNQSSKARDMPAMRLASIREVAQLSNARFFLERDDMVFESRSSEESLCFALAPPGTWKGKASLLEPEELVLDFESLKESNDSFEDSGSSSFAGASHPQEPVDTDLMRTVYVPIGQGKSEARCLMKSMSMKGPFIEDLSIHVPAKKPSPAVVSPEESLVEEINDTRHVSSPTWGSRASQNTENSILPPDSEEKECVWDASLPPSGNVSPLSSIDSTGVVRAMSIVNSCASTYRSDAMTSDGMLSIDRNCDSTKGSIRGDSLESAKTSASRPSDSSGLSDDSNWSNITGSANKPHKGNDPRWNAILAIRLRDGILGMSHFRLLKRLGCGDIGSVYLSELSGTRCYFAMKVMDKASLAVRKKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVSDGDPKRGGAFCVQPVCIEPSSACIQPACFIPRLFPQKNKKSRKPRVEPGLPSSTMPELVAEPTQARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPESPATSYASRDLIRGLLVKEPQNRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVETEPPPKFGPIENTAAAAAAAAVGSTSKRMVGTEMRPEGKFLDFEFF	737

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc120957g00002	737	MobiDBLite	consensus disorder prediction	303	344	-	-
	Stsc120957g00002	737	MobiDBLite	consensus disorder prediction	539	558	-	-
	Stsc120957g00002	737	Gene3D	Phosphorylase Kinase; domain 1	366	451	-	-
	Stsc120957g00002	737	Pfam	Protein kinase domain	567	670	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120957g00002	737	Pfam	Protein kinase domain	369	499	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120957g00002	737	MobiDBLite	consensus disorder prediction	214	235	-	-
	Stsc120957g00002	737	SMART	serkin_6	368	670	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120957g00002	737	MobiDBLite	consensus disorder prediction	214	238	-	-
	Stsc120957g00002	737	FunFam	serine/threonine-protein kinase D6PK-like	565	688	-	-
	Stsc120957g00002	737	ProSiteProfiles	Protein kinase domain profile.	368	670	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc120957g00002	737	FunFam	Serine/threonine-protein kinase D6PK-like	366	451	-	-
	Stsc120957g00002	737	MobiDBLite	consensus disorder prediction	303	341	-	-
	Stsc120957g00002	737	SUPERFAMILY	Protein kinase-like (PK-like)	349	693	IPR011009	-
	Stsc120957g00002	737	CDD	STKc_phototropin_like	366	689	-	-
	Stsc120957g00002	737	Gene3D	Transferase(Phosphotransferase) domain 1	565	687	-	-
	Stsc120957g00002	737	PANTHER	FLIPPASE KINASE 1-RELATED	127	693	-	-
	Stsc120957g00002	737	Gene3D	Transferase(Phosphotransferase) domain 1	452	499	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc120957g00002	Stsc-Chr120957	8415	11355	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc120957g00002	1	737	AGC Kinase Gene Family	AT2G44830	62.720	0.0	889

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Stsc120957g00002		Pkinase	4.3e-29	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc120957g00002	-		-	mtr:25500048	1141.33