Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120956g00006 ATGGAGGCAAAGAAAACACCACCACCACCTCCACCACCACCATCACAATCCACCACCAGCACCAACGATTTCAGCTTTTTCGATGATTTCTTCTTTGAAAAGCCACCGAATGAGTTGGTTGAGGTTGGGGACTTCGGTCCTTACTTGTATGAGTGGTTAGGCATCGACGACGAAGATGCCGTCGTCGAAGCGGCCGTTCAAACACCGGTAAACCACCCTCCTCCTCCTTCTTCACCTACACCTAGCTCAATTATTCTAGAATCTTCTGAAGCGGCACTACCTCCTCCCGTTCCCAATTCACAAAACTCATCCGAATACAATCCCGCCATTGCTAACAACAACAACACCACCACCACCAAAACTGCAGGGCATAAACGTCGAGCAGAATCTGTTGCCGGCGACGGTGGAAATGGAAGTGTGGCAGGCGATGAAGCAGATGATGAGAATAATAACATTAAAAATAGGCTGAAACTGAGAGCAGCAACCATGGCAAAAATTGCGGCCACCTTGACTATGAACCAGAGAAGGAGCGACAACAATGTTCCCAAATTCGCTTTCTTGACCGAAAGCGAAGAAGAATACCTTGAAGATGGCTATAGATGGCGTAAATACGGCCAGAAAATGGTCAGACACAGCCCTTTTCCAAGGAGCTACTATCGCTGCACCGCCATTGGTTGCAACGTGAAGAAGAGAGTGGAGAGGTCTCCGGATGATCCTACCCATGTGATGACAACCTATGAGGGCCTGCACTATCACGGTTTGCCGCCGGAGCTCCCTCCGCCGAGGCCCTTCAGCATTTACAGTAGCGACTCCATTGTTCCTATCACTGCCCCCAAACCTCCCTTCCCTAGAAGAGTTAAAACTGGATGCAGCTGCTGCAGGGGTGTCGGAGGCGGCGATGGTGGCAGTGGTAGTGCAAGGGCAGGACATCAGGTTAATAACACTATTGCTAGTGTTAATGTTGAAAATGGAGCCATTGACAGCGGTGATGGTAGTGCTAGGGCAGGAAATCATGCTAATAACTCTGTTACTAGTGTTAATGTTAATACTGGAGCCAACGCCTGCGGCGGTGGCAGCGGTGTTAGTGGTGTTAATGACGCTGGCTCGGAGCGCAGTGCGGCAATCCCAACTTACGTTTATGATCGGCAGATGCAGTTTGTTGAACAAGCAGTTGCATCACTGCAGAGCTACAGTGCTCCAAACGCTCCCATGAGTGATGTTACTCCTATGGATGTTATTACTGATAACCATGACCAATCTTTCATGGATGTTGATTATGAAGACTTTTTTGGTGATGGATCTTTCAGTGATTTTGCATCAACATCATCTGCTCCTGCTGGTGAGGATTTGGTTGGGAAGAAGATTGGTACTGGGCTGCTTGAGGACATTCTTAATTTCTCACCATCAATGGCACCTCACCCCCATGATCAACAACAATTTCTGTGGCCGTAA 1452 0.4862 MEAKKTPPPPPPPPSQSTTSTNDFSFFDDFFFEKPPNELVEVGDFGPYLYEWLGIDDEDAVVEAAVQTPVNHPPPPSSPTPSSIILESSEAALPPPVPNSQNSSEYNPAIANNNNTTTTKTAGHKRRAESVAGDGGNGSVAGDEADDENNNIKNRLKLRAATMAKIAATLTMNQRRSDNNVPKFAFLTESEEEYLEDGYRWRKYGQKMVRHSPFPRSYYRCTAIGCNVKKRVERSPDDPTHVMTTYEGLHYHGLPPELPPPRPFSIYSSDSIVPITAPKPPFPRRVKTGCSCCRGVGGGDGGSGSARAGHQVNNTIASVNVENGAIDSGDGSARAGNHANNSVTSVNVNTGANACGGGSGVSGVNDAGSERSAAIPTYVYDRQMQFVEQAVASLQSYSAPNAPMSDVTPMDVITDNHDQSFMDVDYEDFFGDGSFSDFASTSSAPAGEDLVGKKIGTGLLEDILNFSPSMAPHPHDQQQFLWP 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120956g00006 483 FunFam WRKY transcription factor 57 181 255 - -
Stsc120956g00006 483 MobiDBLite consensus disorder prediction 1 26 - -
Stsc120956g00006 483 ProSiteProfiles WRKY domain profile. 190 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120956g00006 483 Gene3D WRKY domain 180 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120956g00006 483 MobiDBLite consensus disorder prediction 1 17 - -
Stsc120956g00006 483 MobiDBLite consensus disorder prediction 91 148 - -
Stsc120956g00006 483 MobiDBLite consensus disorder prediction 94 121 - -
Stsc120956g00006 483 Pfam WRKY DNA -binding domain 196 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120956g00006 483 SMART WRKY_cls 195 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120956g00006 483 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 68 261 IPR044810 GO:0003700
Stsc120956g00006 483 SUPERFAMILY WRKY DNA-binding domain 189 255 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120956g00006 Stsc-Chr120956 49354 52392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120956g00006 183 255 WRKY Transcription Factor Family AT5G49520 71.233 4.19e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc120956g00006 WRKY 2.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120956g00006 - - adu:107483375 288.5