Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120956g00005 ATGGGTTCATATCTGATCCCAACAGCACCACCACCAGCAACCACCACAACAACCCAATTACGTGACTCGCACGTGCACAGCCACAACAAGAAGAAGAAGCCTCATTCCAAGAACCAGAAACAGCACCACCATCACCAACACAACAACCGCCACGTCATCAACAAATGGAAATCACAAACACAACAAAACCTCTACTCCACCAAACTCCGCCAAGCCCTCGCCGGATCCACCCTCTCCTCCGGCGGCAAATCCGTCCGCGAAACCGCTGACAGGGTTCTCGCCACTGCCGCAAGAGGCAGAAGCCGATGGAGCCGCGCCATACTCACCAACCGTCTGAAGCTCAGCTTCATGAAGAAGAAAAAGACGGCAAAGAAAAGAGTGGCGGCAGCGGAGGCGGGGTCGAGAAGAAGAAGAAGCCGGTTGAACGTGGTTCGGCTGAAGGTAAAGACGGTTCCGGCGGTTCAGAAGAAAGTGAGATTGTTGGGAAGGTTGGTTCCCGGGTGCAGGAAGGAACCTCTTCCGGTGATTCTAGAAGAAGCCATTGATTATATACCTGCTCTTGAGATGCAGGTTCGCGCCATGACTGCTCTCGCTAACTTGCTCTTAGCAAATTCTTCTTCTTCTTCATCTTCCACCGCTCATGCTCCTCCCACCTGA 657 0.5297 MGSYLIPTAPPPATTTTTQLRDSHVHSHNKKKKPHSKNQKQHHHHQHNNRHVINKWKSQTQQNLYSTKLRQALAGSTLSSGGKSVRETADRVLATAARGRSRWSRAILTNRLKLSFMKKKKTAKKRVAAAEAGSRRRRSRLNVVRLKVKTVPAVQKKVRLLGRLVPGCRKEPLPVILEEAIDYIPALEMQVRAMTALANLLLANSSSSSSSTAHAPPT 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120956g00005 218 CDD bHLH_AtIBH1_like 152 194 IPR044549 GO:0006355
Stsc120956g00005 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 205 IPR036638 GO:0046983
Stsc120956g00005 218 MobiDBLite consensus disorder prediction 25 49 - -
Stsc120956g00005 218 MobiDBLite consensus disorder prediction 1 49 - -
Stsc120956g00005 218 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 58 205 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120956g00005 Stsc-Chr120956 29129 30313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120956g00005 53 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 48.750 1.84e-43 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120956g00005 - - adu:107483409 230.335