Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120954g00010 ATGGCAGTGGAGTTAATGGGATTCCCAAAAATGGACGACCCAAACAACAAAGCCATACAAGAAGCAGCATCCGAGGGCATAAAGGGAATGGAGCACCTCGTTCGTCTTCTTTCAAACCCTTCACAAAACGACACCACTGACCTTACAAACGTCACCGTTTCAAAGTTCCGAAAACTCATCTCCTTACTTAACCGCACCGGCCGCGCCCGCTTCCGCCGTGCACCAATTTCAAATTCCGACGACACTTTAACCCTCTCTCCGGCCAACTTAACTCCTCCTCCTCCACCTCCTCCGCCGCCGTCGCAACCGCAGTCGCAGTCGCAGTCACATCCACAGCCTCTTGCGGTTTCTCCGGTCTCCGTCCACCACCCTACTCCTCTTCTTCCGCCTCAGACTCTCACTCTTGACTTCACCAAACCTAACAACAGCTTCCTCACCACCGTTTCCAACAACACTGGCGTCAAATCCATGGAGCTGGAGTTCTCGAAGGACACGGCGACGTTTAGCGTCTCGTCGAACTCTTCGTTTATGTCCTCCGCCATCACCGGCGACGGAAGCGTCTCCAACGGCAAGCTCGGAACCTCGATCTTCCTCAACCCTGCCGGAAAATTGCCTCTCTCGTCTTCGGCGCCGGCTCCGGTCAAGAAAAGGTGCCACGACCACCACTCCGACGATGTCTCCGGCAAGGTCTCCGGTTCTTCCAGCAAGTGCCACTGCATCAAGCGAAGGAAAAATAGGGTGAAGAAGACAATAAGAGTTCCGGCAATTAGTACGAAGATAGCCGATATTCCGGCGGACGAGTACTCATGGAGGAAGTACGGTCAGAAACCGATAAAAGGGTCACCGTACCCGAGGGGTTATTATAAGTGCAGTACTGTGAGAGGGTGCCCAGCGAGGAAACACGTGGAGCGGGCACCAGACGATCCTTCTATGCTGATCGTGACGTACGAAGGGGAGCACCGTCACTCCATTCAGGCCGCGATGCACGATAACATTTCCCCTGCGGGAGTGGGTTTGGTATTCGGGTCAACGTAA 1035 0.543 MAVELMGFPKMDDPNNKAIQEAASEGIKGMEHLVRLLSNPSQNDTTDLTNVTVSKFRKLISLLNRTGRARFRRAPISNSDDTLTLSPANLTPPPPPPPPPSQPQSQSQSHPQPLAVSPVSVHHPTPLLPPQTLTLDFTKPNNSFLTTVSNNTGVKSMELEFSKDTATFSVSSNSSFMSSAITGDGSVSNGKLGTSIFLNPAGKLPLSSSAPAPVKKRCHDHHSDDVSGKVSGSSSKCHCIKRRKNRVKKTIRVPAISTKIADIPADEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPSMLIVTYEGEHRHSIQAAMHDNISPAGVGLVFGST 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120954g00010 344 Gene3D WRKY domain 251 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120954g00010 344 Pfam WRKY DNA -binding domain 266 322 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120954g00010 344 MobiDBLite consensus disorder prediction 208 229 - -
Stsc120954g00010 344 MobiDBLite consensus disorder prediction 88 106 - -
Stsc120954g00010 344 FunFam WRKY transcription factor 65 248 325 - -
Stsc120954g00010 344 ProSiteProfiles WRKY domain profile. 259 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc120954g00010 344 Pfam Plant zinc cluster domain 215 262 IPR018872 -
Stsc120954g00010 344 MobiDBLite consensus disorder prediction 71 133 - -
Stsc120954g00010 344 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 326 IPR044810 GO:0003700
Stsc120954g00010 344 SUPERFAMILY WRKY DNA-binding domain 262 324 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc120954g00010 344 SMART WRKY_cls 264 324 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120954g00010 Stsc-Chr120954 42936 46088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120954g00010 1 343 WRKY Transcription Factor Family AT2G24570 52.408 7.99e-107 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc120954g00010 WRKY 5.6e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120954g00010 - - tpra:123902288 390.578