Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120953g00007 ATGTCCAGGCGGCGGCAAAGACGAAGCTCAACTGGAGGCTTTGAATTCACGGAGAATGAGATCAATGATCTTGCTTCTAGGTTACAAGCATTGCTCCCACAAACAAGGAACTCAAGGCAGGTATCAGTGTTGGAGATCTTGAAGGAAACTTGCAGTCACATCAAGAGACTACAGAAAGATGTGGAAGACCTTAGTGAAACGCTGACAGGGCTCTTGGATTCTCTTCACATTACTGATATTGACATCACTATTTTGCAAGATCTTTTGAAACAATAA 276 0.4275 MSRRRQRRSSTGGFEFTENEINDLASRLQALLPQTRNSRQVSVLEILKETCSHIKRLQKDVEDLSETLTGLLDSLHITDIDITILQDLLKQ 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120953g00007 91 Coils Coil 47 74 - -
Stsc120953g00007 91 Gene3D - 2 87 IPR036638 GO:0046983
Stsc120953g00007 91 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 57 IPR011598 GO:0046983
Stsc120953g00007 91 Pfam Helix-loop-helix DNA-binding domain 20 58 IPR011598 GO:0046983
Stsc120953g00007 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 74 IPR036638 GO:0046983
Stsc120953g00007 91 PANTHER DNA BINDING PROTEIN 1 90 IPR044172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120953g00007 Stsc-Chr120953 74123 75145 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120953g00007 1 74 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 46.753 8.23e-16 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120953g00007 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120953g00007 - - gmx:100790746 73.559