Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120953g00006 ATGGAGGTTTCTGTGAAAGGCTTCATGCTCTGTTTTTTGCTCATGGCTCTGCTCTCAGCTCATTGCGCTACCTCAATTAACGAGGGCAATGTAGGAACAGAGAGCTTGCAGAGCTCGAAGAACTCGTCAATGGTGGAGAGGTCAGGTGACACTCTGAAGAATGAGCACGCCGTTGATGATCCAGAGAAGATAGCTTCGATGGTTGATACGACCATTCGCAACCACACAGCAAGAAGGAATCTGAATTTCTTCACATGTGGATCTGGCAACCCGATCGACGACTGCTGGCGCTGCGACAAGCGCTGGTACGCCCACCGAAAGCGGTTGGCAGACTGCGCCATTGGTTTCGGGCGCAATGCCATTGGAGGCCGTGATGGGAAGTACTATGTTGTGACTGACCCTGGTGATGATGACCCTGTTAATCCCAAACCTGGTACCCTTCGCCATGCTGTCATCCAAGACAGGCCGTTGTGGATTGTCTTCAAGAGGGACATGGTCATTACTTTGAAACAAGAGCTTCTCATGAACAGCTTCAAGACCATAGATGCTCGTGGTGTCAATGTTCACATTGCCTATGGTGCTTGCATTACACTACAGTTCATCACCAATGTAATCATCCATGGCCTCCATATCCATGATTGCAAGCCAACTGGGAACGCCATGGTTCGCAGCTCTCCCAGCCATTATGGATGGAGGACCATGGCTGATGGCGATGGAATATCACTCTTTGGTGCAAGTCACGTTTGGCTTGACCACAACTCCCTCTCTAATTGTGCTGATGGACTCATTGATGCTATCATGGGTTCAACTGCTATTACCATTTCTAACAACTACTTTACCCACCATAATGAGGTTATGCTACTAGGACACAGTGACTCCTATGTTCGAGACAAGCAGATGCAAGTAACTATTGCCTACAATCATTTTGGGGAAGGTCTGATCCAAAGAATGCCAAGGTGTAGACATGGATATTTCCACGTAGTAAACAATGACTATACTCACTGGGAGATGTATGCAATTGGTGGCAGTGCTGAGCCCACAATTAACAGCCAGGGCAACAGATACCTTGCCCCTCAGAACCCTTTTGCTAAGGAGGTAACAAAGAGGGTGGATACAGGGGAAACAATATGGAAAGGATGGAATTGGAGGTCCGAGGGAGACCTTCTTCTCAATGGAGCATTTTTCACTTCATCAGGAGCCGGAGCTGCGTCAAGCTACGCCAGAGCCTCCAGTCTTGCCGCCAAATCCTCTTCGCTCGTCGGAACCATTACCTCCGGCGCCGGTGTTCTTAGCTGCCGCAGGGGCTACATGTGTTAA 1317 0.4913 MEVSVKGFMLCFLLMALLSAHCATSINEGNVGTESLQSSKNSSMVERSGDTLKNEHAVDDPEKIASMVDTTIRNHTARRNLNFFTCGSGNPIDDCWRCDKRWYAHRKRLADCAIGFGRNAIGGRDGKYYVVTDPGDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELLMNSFKTIDARGVNVHIAYGACITLQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISLFGASHVWLDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPQNPFAKEVTKRVDTGETIWKGWNWRSEGDLLLNGAFFTSSGAGAASSYARASSLAAKSSSLVGTITSGAGVLSCRRGYMC 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120953g00006 438 MobiDBLite consensus disorder prediction 33 48 - -
Stsc120953g00006 438 SUPERFAMILY Pectin lyase-like 67 432 IPR011050 -
Stsc120953g00006 438 SMART amb_all 164 361 IPR002022 -
Stsc120953g00006 438 Gene3D - 89 431 IPR012334 -
Stsc120953g00006 438 MobiDBLite consensus disorder prediction 33 52 - -
Stsc120953g00006 438 Pfam Pectate lyase 193 353 IPR002022 -
Stsc120953g00006 438 FunFam Pectate lyase 89 431 - -
Stsc120953g00006 438 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Stsc120953g00006 438 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Stsc120953g00006 438 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Stsc120953g00006 438 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Stsc120953g00006 438 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Stsc120953g00006 438 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Stsc120953g00006 438 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Stsc120953g00006 438 PRINTS Pollen allergen Amb family signature 409 432 IPR018082 -
Stsc120953g00006 438 PANTHER PECTATE LYASE 18-RELATED 57 435 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120953g00006 Stsc-Chr120953 67991 73480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120953g00006 31 438 Polysaccharide Lyase AT4G13710 76.145 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120953g00006 K01728 - gmx:100809277 754.207