Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120950g00006 ATGGCGCTACTGCGTAGTCTTTGCGTTCCTTCGACTACTCATCTTTCTACACACAACCATTCTTTCGCATCGTCCCTCAACATTCACATCCACTCCATCAATCCACTCTCTTCCTTTCAATTATCCATTCCCCATCACTCCCCAACGCTCCTCACAACCAAACAAAACCCTAATTTCACTCTCAGATTTTCCCAACAGGCTCAGACTGAGACTGAAGCTGAGGCAGCACCGCAAGAGGTTTCTGAGACGAGGTTGCTCGCCCAGAACGTGCCATGGACAAGCACCCCTGAAGACATTCGTTCCTTGTTCGAGAGATATGGAAAAGTGCTCCAAGTTGAGTTGTCAATGTATAGCAAGACGAAGAACAGGGGTTTGGCCTTTGTGGAAATGAGTTCACCTGAAGAAGCTCGTGCTGCTCTCCAGAATCTCGAATCGTATGAGTTTGATGGCCGGATATTAAAACTCAATTACGCTCATCCAAAAAAGAAGAAAACTCCACCACCCGTGACACCAAAGCCTTTGACATTTAACTTGTTTGTTGCAAACTTGCATTATGAAGCAAGGTCTAAGGATCTCAAGGAGTTTTTTGATGATGGAAGTGGCAGCGTTGTTTCTGCAGAGGTTATATTTCATGATAACCCTAGAAGATCATCAGGCTATGGTTTTGTAGGCTTCAAATCCAAGAAACAAGCTGATTCAGCACTTAATGAGTTCCAAGGAAAGATCTTTATGGGAAGACCTTTAAGGGTAGATCGTGGGAGGCGATTTGTTAAAGAACGAGAAAAGGAGAGTGAAAAATCTGAAGACACGTCTTCTGAGTTGAATGGTGAAGAAGCTGACAAGGCTGATTGA 852 0.4425 MALLRSLCVPSTTHLSTHNHSFASSLNIHIHSINPLSSFQLSIPHHSPTLLTTKQNPNFTLRFSQQAQTETEAEAAPQEVSETRLLAQNVPWTSTPEDIRSLFERYGKVLQVELSMYSKTKNRGLAFVEMSSPEEARAALQNLESYEFDGRILKLNYAHPKKKKTPPPVTPKPLTFNLFVANLHYEARSKDLKEFFDDGSGSVVSAEVIFHDNPRRSSGYGFVGFKSKKQADSALNEFQGKIFMGRPLRVDRGRRFVKEREKESEKSEDTSSELNGEEADKAD 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120950g00006 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 255 IPR000504 GO:0003723
Stsc120950g00006 283 SUPERFAMILY RNA-binding domain, RBD 167 257 IPR035979 GO:0003676
Stsc120950g00006 283 SUPERFAMILY RNA-binding domain, RBD 62 168 IPR035979 GO:0003676
Stsc120950g00006 283 Gene3D - 174 281 IPR012677 -
Stsc120950g00006 283 PANTHER OS02G0815200 PROTEIN 29 252 - -
Stsc120950g00006 283 CDD RRM_SF 178 251 - -
Stsc120950g00006 283 MobiDBLite consensus disorder prediction 254 283 - -
Stsc120950g00006 283 Gene3D - 51 169 IPR012677 -
Stsc120950g00006 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 160 IPR000504 GO:0003723
Stsc120950g00006 283 SMART rrm1_1 177 251 IPR000504 GO:0003723
Stsc120950g00006 283 SMART rrm1_1 84 156 IPR000504 GO:0003723
Stsc120950g00006 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 153 IPR000504 GO:0003723
Stsc120950g00006 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 249 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120950g00006 Stsc-Chr120950 48013 50935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120950g00006 70 255 Eukaryotic Initiation Factors Gene Family AT3G16380 29.744 2.31e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120950g00006 - - gmx:100790439 323.168