Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120950g00004 ATGGCACTAGAAGCTGTGGTTTTTCCACAAGATCCCTTATTCTCCTCCTCCTCCTATCCTACCACCAAGGCAGATTACTTCCACTCTTCATTTCTCGGAGCTGGAGGACCTTCTTGGACTCACCACCATGATCATCAAGAGAAACTTCTCATCGGAATTATAAACAACAACAACATCTTTGAACACCAGAGTAATCTCCACCACCACCATGCAACAACTACTACTACTAATAATAATTCAGACTCTTGTAATAATAATTCTCCTGCTTCCAACGACCAGTGGGATCATCATTCTCACTACTCTTCTACTTCCTCCCCTGACTGCGCTGCCACTACCACCGTTGATCAACCTTCTTTCCCCGCCACCACCACCACGGGACGCCGCAAACGCCGTCGCACCAAAACCACGAAGAACAAGGAGGAGATCGAGAACCAGAGGATGACTCACATTGCTGTTGAACGCAACCGCCGCAAACAGATGAACGACTACCTCGCCGTCCTTCGTTCTTTGATGCCTCCTTCTTATGTTCAAAGGGGTGACCAAGCTTCTATTATTGGAGGCGCCATTAACTTTGTGAAGGAGCTAGAGCAGCTTTTGCAGTCCATGGAGGCCCAAAAGAAGCCCAACCACGGTGGCGCCGCCGCCATGCATAGTAGTGGGCCATCATCATCATCATCACCTTTTGCGGAGTTCTTCACGTTTCCTCAGTACACAACGCGCGCTCATCATAACCAACAACAACAGGGCAACAACACAACGACGATGGCGGCGGCGGTGGCGGACATAGAAGTGACAATGGTGGACAACCATGCGAACCTGAAGATTCTATCAAAGAAACGAAATGGGCAGCTGATAAAGATGGTTGTTGGTCTCCAATCTCTAAGGCTCACCATTCTCCACCTTAATGTTACCACTCTCCATGATTTGGTCCTTTACTCCGTTAGCGTAAAGGTAGAGGATGAGTGTCAGCTGAATACGGTGGATGAAATAGCTGCTGCTGTCAATCAATTACTAAGCGCACTTCAACAAGAGCCATCATCATCTTTCAACTCAATTAATTAA 1062 0.4765 MALEAVVFPQDPLFSSSSYPTTKADYFHSSFLGAGGPSWTHHHDHQEKLLIGIINNNNIFEHQSNLHHHHATTTTTNNNSDSCNNNSPASNDQWDHHSHYSSTSSPDCAATTTVDQPSFPATTTTGRRKRRRTKTTKNKEEIENQRMTHIAVERNRRKQMNDYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQSMEAQKKPNHGGAAAMHSSGPSSSSSPFAEFFTFPQYTTRAHHNQQQQGNNTTTMAAAVADIEVTMVDNHANLKILSKKRNGQLIKMVVGLQSLRLTILHLNVTTLHDLVLYSVSVKVEDECQLNTVDEIAAAVNQLLSALQQEPSSSFNSIN 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120950g00004 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 216 IPR036638 GO:0046983
Stsc120950g00004 353 Gene3D - 134 209 IPR036638 GO:0046983
Stsc120950g00004 353 SMART finulus 150 201 IPR011598 GO:0046983
Stsc120950g00004 353 PANTHER MAX DIMERIZATION, MAD 63 344 - -
Stsc120950g00004 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 144 195 IPR011598 GO:0046983
Stsc120950g00004 353 Pfam Helix-loop-helix DNA-binding domain 145 196 IPR011598 GO:0046983
Stsc120950g00004 353 FunFam Basic helix-loop-helix transcription factor 135 210 - -
Stsc120950g00004 353 CDD bHLH_AtFAMA_like 147 210 - -
Stsc120950g00004 353 MobiDBLite consensus disorder prediction 69 124 - -
Stsc120950g00004 353 MobiDBLite consensus disorder prediction 68 142 - -
Stsc120950g00004 353 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120950g00004 Stsc-Chr120950 35830 38036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120950g00004 1 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.287 3.19e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc120950g00004 HLH 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120950g00004 - - gmx:100789380 317.775