Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120950g00003 ATGTCAATCACCCAAACCCAATTAACACGCCGCCATGGCCTTCTCGCCGCGACCCTGCTCCTCCTCCACCTCCTCCTTCTTCCGCCACAAACCGCCGCGCAGAGTGCTAACACGATGCCGCCTCCGCCGCCGGAAGCGCTCACCAAGGTGAAATTCGACAAATCCATGGCCGTCGTGTTGGTCATCCTCGTCATCGTGTTCTTCGCCCTCGGCTTCCTCTCTGTGTACACTCGCCAGTGCGCGGAGCGTCGGATGAGGGCGAGGTTCGACCTCACGTTCCCCCTCGGCGGAAGCCACCGCCGGCAGCGTGGCTTGGATAGGGAGATAATCGAGACGTTTCCGACGTTTGTTTACTCCACCGTGAAGACGCAAAAGATTGGTCGTACCACGCTAGAATGCGCCGTGTGCCTGAACGAGTTCAACGACGACGAAACGCTGCGTTTGATCCCAAAGTGTAGCCACGTGTTCCATCCTGATTGCATTGACGCATGGCTCGCCAACCACTCTACCTGCCCCGTTTGCCGCGCCAACCTCTTCCCCATCCCCTCCGACAACAACAATAACGATAACGATAACGGCACCTTCGTTGCCGTTCAGATCCCTGATCCCGAATCCAACGGTTCACAGAGATCCGAAATTGCACAGATTAATAACGGTAACGATAACGGAGGAGGAGGAGGAACGGCATCAGCAACGGCAATGGTAATAGAGTCTCCGAAGATGGATAATTCAGTCAACCAGAGGCGTACGCCGTTACGGTCAAGGTCAACGGGGTTTAGGATTGGGAGTTTGTTTCCAAGGTCGCATTCGACGGGTCACTCGCTGGTTCAACCGGGGGAGAGCTTGGAGCGGTTTACGCTGAGGCTGCCGGAAGATGTGCGGAACCGGCTTCTTATCAGTTCGACGCCGAGACGCACGACGAGTCCCGGCGGCGCCATGTTCGCAAGGGAGAGCAGCGTGAGGAGAGGGTTTAGGACCAGGAGTGTGGGTCCCGGAAGGAGCTACGTGCAGCATGAACGGTTTGGGCGGTTAGACCGGCGAGGGTTCGATTGGACACCGCCGTTTTTTAGTCGGGGCAATTCTAGCAGGTCGCCTCCGGTGAACGTTTCTACTGCGGAGGGGAACATGGAAGTGGCGGTGGAAACTGGTGAACGGTCTTCGGATCGGTTATTTGGAGGCGGTGAGAGTTAG 1191 0.5718 MSITQTQLTRRHGLLAATLLLLHLLLLPPQTAAQSANTMPPPPPEALTKVKFDKSMAVVLVILVIVFFALGFLSVYTRQCAERRMRARFDLTFPLGGSHRRQRGLDREIIETFPTFVYSTVKTQKIGRTTLECAVCLNEFNDDETLRLIPKCSHVFHPDCIDAWLANHSTCPVCRANLFPIPSDNNNNDNDNGTFVAVQIPDPESNGSQRSEIAQINNGNDNGGGGGTASATAMVIESPKMDNSVNQRRTPLRSRSTGFRIGSLFPRSHSTGHSLVQPGESLERFTLRLPEDVRNRLLISSTPRRTTSPGGAMFARESSVRRGFRTRSVGPGRSYVQHERFGRLDRRGFDWTPPFFSRGNSSRSPPVNVSTAEGNMEVAVETGERSSDRLFGGGES 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120950g00003 396 CDD RING-H2_EL5-like 132 175 - -
Stsc120950g00003 396 Pfam Ring finger domain 132 175 IPR001841 -
Stsc120950g00003 396 MobiDBLite consensus disorder prediction 301 331 - -
Stsc120950g00003 396 SMART ring_2 133 174 IPR001841 -
Stsc120950g00003 396 PANTHER RING FINGER DOMAIN-CONTAINING 33 186 - -
Stsc120950g00003 396 FunFam E3 ubiquitin-protein ligase ATL6 96 181 - -
Stsc120950g00003 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 180 IPR013083 -
Stsc120950g00003 396 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Stsc120950g00003 396 SUPERFAMILY RING/U-box 125 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120950g00003 Stsc-Chr120950 14766 15956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120950g00003 12 358 Rapid Response to Elicitors AT3G05200 40.000 1.14e-63 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120950g00003 K10664 - gmx:100807828 353.214