Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120949g00015 ATGGGGGCCAAGGCAAAGAAAGCTATGAAGAAGAGTTTGAAGAAGGCAACTGCTGCTACCAACTCACCATCTCCTTCCATCATCAAATCAGAGGGTCCTGATTATTTGCCCTTGGAAGGTGGTCCTGCTCGAAATCTCCCTCAACAGAAGCCTTTAGAGAGTGCCGCCACGGTGTTGTATATCGGCCGGATTCCGCACGGGTTCTACGAGAAGGAGATGGAAGGCTTCTTTGGACAATTTGGGACCATCAAGAGATTGAAAATTGCAAGAAATAAGAAAACAGGAAAATCAAGACATTTTGGGTTCATTGAATTTCAGTCTCCTGAGGTAGCTAAAGTTGTGGCTGAAACTATGCACAATTATCTGCTTTTTGAACACCTTCTCCAAGTACACTTGATACCGGCTGAGGAAGTTCATCCACAATTATGGAGAGGTTTCAGTCACAAGCACAAGCCAGTTGATTCAGTACAAGTTGAACGAGAGCGACATGACAAGGAAAGAACATTGGAAGAGTACAATAAGCTGGTGGGGAAGATTATGAAGCGTGACAATAAACGACGAAAAAGGATGGAGGCTGCTGGCATTGATTATGAATGCCCTGCGATTGTCGGTAACATCCAGCCAGCACCAAAGAAAATAAAGTTTGAAGATTAA 654 0.4404 MGAKAKKAMKKSLKKATAATNSPSPSIIKSEGPDYLPLEGGPARNLPQQKPLESAATVLYIGRIPHGFYEKEMEGFFGQFGTIKRLKIARNKKTGKSRHFGFIEFQSPEVAKVVAETMHNYLLFEHLLQVHLIPAEEVHPQLWRGFSHKHKPVDSVQVERERHDKERTLEEYNKLVGKIMKRDNKRRKRMEAAGIDYECPAIVGNIQPAPKKIKFED 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120949g00015 217 CDD RRM_NIFK_like 58 131 - -
Stsc120949g00015 217 SUPERFAMILY RNA-binding domain, RBD 57 198 IPR035979 GO:0003676
Stsc120949g00015 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 135 IPR000504 GO:0003723
Stsc120949g00015 217 Coils Coil 155 175 - -
Stsc120949g00015 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 126 IPR000504 GO:0003723
Stsc120949g00015 217 MobiDBLite consensus disorder prediction 1 48 - -
Stsc120949g00015 217 Gene3D - 3 132 IPR012677 -
Stsc120949g00015 217 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 4 216 - -
Stsc120949g00015 217 SMART rrm1_1 58 131 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120949g00015 Stsc-Chr120949 93904 97631 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120949g00015 57 130 Eukaryotic Initiation Factors Gene Family AT1G71770 35.135 8.42e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120949g00015 K14838 - gmx:100814276 323.939