Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120949g00013 ATGCAAACCCAAGGTTCATCCCCCAGTTCTTCAATTACACCCAGATTACTATCAACCCTTTTCACAATCCTCCTCCTTTTCCAACAACCATCCACAGCCAAGAAGCACCACTCACCATGCCCTCCTTCTTCCTGCGGCAAAATCCGCAACATAACAAACCCATTCCGACTCAAAGGGGATCCAGGCCACTGCGGCAACAAAAAATACGAACTCGAATGCGATAACAACAATATCACACTGCTAACTCTCTTCTCCGGTAACTACCACGTTCACGACATCAATTACAAGAACTACAGCATCAAATTGAGTGACGCAGGCCTCACCGACAACGCTAATTGCTCATTCATCCCTCGCAATTTCTTGTACGACGGCAGTTTCAAGTTCGCCATCGGCCCCGACGATTTCGGATCGCAGCCGTTCACTTTGAACAATTTCGATCCAGATACAGTAGACCCTTTCGATCCATTCAGAGTAGCGTATTTCAACTGCACCGATGCAGTTACTGACGACACTGCATACGTGAAGGTAGATAGTAATAACAACACTGCAAGTGGTTGTAGTGGGTTGGAGTTGGGGAGCATGTATGTAATAGTGGAACCATCGCGTTATTCGTACAGATTGAGTGACATCAAGGTTGGGTGCAGTTTGATGGTGGCGACGCTAACGGATAAGGTTCCGGCGGAGATGGGAGAAGGGAATAGAAACGTTTCTTATGAAGAGATCCGGAAAGCGGTTGGAGAAGGGTTTAGCGTGTCTTGGTTGCCGGCGGTTTGTGAGGAGAGGTGTGGAAAGAAGACAAATTGCAAGCTGGTCAATGGAACGACGGGACAAGTCCAATGTGACAACCGCTATTGCCACTACGCTTACCATACAACCGATAAGTGCGGAATTACGCAACAAGCTATTGGTTATGTTCGAGCTTATCTCAGAGGCATTGTATTTGGATTTGGAAGTAGAATAACATTCAGCACAAGACAACTGAACAACGCAGTTGGGCTGCAATATTTTGATGCGGGCATATACATTGGTAGAAACATTATACCAATAATACTAGTAACCAGATACGTGCTTGGAGTTGCACTTCTACTTGCCGTATTGATCTACATATGGCGACGAAGACATTGGTCAATATATGGAAACATTGAACATTTTTTGCTAGACAGCAATCTAAACCCCATAAGGTATGAATACAAGGAAATCAAGAAAATGAGTGGTGGTTTCACAGTGAAATTGGGTAAAGGTGGATTCGGCGCTGTATACAAAGGAAAACTTCGTAGTGGTCCTGATGTAGCAATAAAGATGCTGAACCAATCCAATGGTAATGGCCAAGACTTCATCAACGAAGTTGCTACAATTGGAAGAATACATCATGTTAATGTGGTACGTCTTGTTGGATACTGTGTCGAGAAGAAAAAGCGTGCTCTGGTGTATGAATTCATGCCTAATGGATCACTCGATAAATACATATTCGCTAAAGAAGGGACCGTGCCTTTAAGTTATGAGAAGATGTATGAAATATCTCTTGGGGTGGCTCGTGGAATTGCATATTTGCATCAAGGTTGTGATATGCAAATTTTACATTTTGATATCAAGCCGCATAATATTCTTCTGGATGATAACTTTGTTCCCAAGGTATCAGATTTCGGACTTGCAAAGCTGTATTCGGTAGATGATAGCACTGTTACTTTGACTGCAGCAAGAGGAACTTTAGGGTACATGGCTCCAGAGTTGTTCTACAAAAACATTGGAGGAGTGTCTTATAAGGCCGATGTCTATAGTTTTGGAATGCTTTTGATGGAAATGGCGAGTAGGAGGAGGAATTCAAATGCTAATGCCGATGAATCAAGCCAATTTTTCTTCCCATTTTGGATACATGATCAACTTTATGAAGAGAGAGAGATTGAAATCGAAGATGCCTCGGAGGAGGAAAAGATTCTAGTTAAAAGGATGTTCATAGTTGCGCTTTGGTGCATACAGCTAAAGCCTAGTGATCGTCCTTCAATGAACAAGGTAGTACAGATGCTGGAAGGGGACAACGACGGAAGTCTTGCAATGCCTCCAAAGCCTTCTTTCTATTCGAATGAAGCTTCTAGACATGATAAGGAAATAAATTCCGATCAAGCATCAAGCATGGATTCCTCTAGTACTACTTATCGTGGTGAAACCACAACTTACTATTCAATGGAGGACGATAGATGA 2199 0.4297 MQTQGSSPSSSITPRLLSTLFTILLLFQQPSTAKKHHSPCPPSSCGKIRNITNPFRLKGDPGHCGNKKYELECDNNNITLLTLFSGNYHVHDINYKNYSIKLSDAGLTDNANCSFIPRNFLYDGSFKFAIGPDDFGSQPFTLNNFDPDTVDPFDPFRVAYFNCTDAVTDDTAYVKVDSNNNTASGCSGLELGSMYVIVEPSRYSYRLSDIKVGCSLMVATLTDKVPAEMGEGNRNVSYEEIRKAVGEGFSVSWLPAVCEERCGKKTNCKLVNGTTGQVQCDNRYCHYAYHTTDKCGITQQAIGYVRAYLRGIVFGFGSRITFSTRQLNNAVGLQYFDAGIYIGRNIIPIILVTRYVLGVALLLAVLIYIWRRRHWSIYGNIEHFLLDSNLNPIRYEYKEIKKMSGGFTVKLGKGGFGAVYKGKLRSGPDVAIKMLNQSNGNGQDFINEVATIGRIHHVNVVRLVGYCVEKKKRALVYEFMPNGSLDKYIFAKEGTVPLSYEKMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDDNFVPKVSDFGLAKLYSVDDSTVTLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRRNSNANADESSQFFFPFWIHDQLYEEREIEIEDASEEEKILVKRMFIVALWCIQLKPSDRPSMNKVVQMLEGDNDGSLAMPPKPSFYSNEASRHDKEINSDQASSMDSSSTTYRGETTTYYSMEDDR 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120949g00013 732 ProSitePatterns Protein kinases ATP-binding region signature. 411 433 IPR017441 GO:0005524
Stsc120949g00013 732 Pfam Protein kinase domain 409 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120949g00013 732 PANTHER RUST RESISTANCE KINASE LR10-RELATED 376 697 IPR045874 GO:0004672
Stsc120949g00013 732 FunFam serine/threonine-protein kinase PBS1-like 380 479 - -
Stsc120949g00013 732 CDD STKc_IRAK 411 677 - -
Stsc120949g00013 732 SUPERFAMILY Protein kinase-like (PK-like) 392 676 IPR011009 -
Stsc120949g00013 732 MobiDBLite consensus disorder prediction 707 724 - -
Stsc120949g00013 732 ProSiteProfiles Protein kinase domain profile. 405 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120949g00013 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 525 537 IPR008271 GO:0004672|GO:0006468
Stsc120949g00013 732 Pfam Wall-associated receptor kinase galacturonan-binding 40 104 IPR025287 GO:0030247
Stsc120949g00013 732 MobiDBLite consensus disorder prediction 678 732 - -
Stsc120949g00013 732 SMART serkin_6 405 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120949g00013 732 Gene3D Phosphorylase Kinase; domain 1 386 479 - -
Stsc120949g00013 732 Gene3D Transferase(Phosphotransferase) domain 1 480 684 - -
Stsc120949g00013 732 FunFam PR5-like receptor kinase 480 686 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120949g00013 Stsc-Chr120949 83280 88987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120949g00013 344 729 Receptor kinase-like Gene Family AT4G18250 43.860 5.30e-104 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc120949g00013 Pkinase 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120949g00013 - - lja:Lj0g3v0275229.4 924.08