Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120949g00008 ATGAAGGATCCAAAACGACACTCGCCTCGCCAGGTCACGTTTCGGCGATCTGTCGGCGATTCAGACGGTACGATCACGAGCTTCAAGAATGTTCGCCGGAGGAGGCTCAGAGTCCGGCGTATGAAGTACACCTGCGAGACCAAGATCCAAGTCGGGAATGGAGATTCTCCGGCGGCGGATGCGGATGTGAAGATCGTTGATTCCGATGGCAAGAGAAGGGAGATTAACGAATCGATGGAAATATCGCTGTCGCTGTCGTCAACGTCGTCTGAGGAGGAGGATCGGCCGTCGGCGGGGGAAAAATGTGGCGGAGTTCTGTCGTACGGTTCGCTGTCGGTGATCGGGAACAGGAAGGAGATGGAGGATGCGGTGAGCGTGGAGATAGGGTTTGTTGGGAAGGAGAATTCGAAGTGCGACTTCTTCGCGGTGTTTGATGGCCACGGCGGAGCTCAGGTGGCGGAGGTGTGCCGGGAGAGACTGCACCGGCTGGTGGCGGAGGAGATAGAGAGGAGAAGCGAGAAGGTTGAGTGGGATTGGAAGGGTGTGATGGAAGGGTGTTTTCGTAAATTGGACGGAGAGGTTGCGGGCAATGCCGCGGTGAGGACGGTGGGTTCTACGGCGGTTTTAGCCGTGGTTGCGACGGAGGAAGTCGTTGTCGCAAATTGCGGTGATTGTAGGGCCGTGTTGGGAAGGGGAGGCGAGGCCGTGGATTTGTCTAGTGATCATAAGCCGGACAGGCCTGATGAGTTGATGCGAATCGAAGAGGCTGGTGGAAGGGTCATAAACTGGAATGGCCAGCGCGTTCTAGGTGTTCTTGCCACTTCGCGATCTATAGGAGATCAATACCTTAGGCCATATGTAATATCAAAACCAGAAGTCACGGTGACAAAGCGAAGCAGCAAAGATGAATTCCTTATACTAGCAAGTGATGGCTTGTGGGATGTGATTTCCAGTGAAGCAGCGTGTCAGCTTGTAAGGCGAAGCCTCCACGGCCAGATTAAGAGAGTTTCCAATGCTGTTGGAAGGCAAAACCGCGCTACCGAGGCTGCTGCACTCTTAGTTGAGATAGCAATGGCAAAGGGAAGCAGAGATAACACCAGTGTCATTGTTATCGAGCTAAACAGAACATCTTCGTCCAGCTGA 1143 0.5381 MKDPKRHSPRQVTFRRSVGDSDGTITSFKNVRRRRLRVRRMKYTCETKIQVGNGDSPAADADVKIVDSDGKRREINESMEISLSLSSTSSEEEDRPSAGEKCGGVLSYGSLSVIGNRKEMEDAVSVEIGFVGKENSKCDFFAVFDGHGGAQVAEVCRERLHRLVAEEIERRSEKVEWDWKGVMEGCFRKLDGEVAGNAAVRTVGSTAVLAVVATEEVVVANCGDCRAVLGRGGEAVDLSSDHKPDRPDELMRIEEAGGRVINWNGQRVLGVLATSRSIGDQYLRPYVISKPEVTVTKRSSKDEFLILASDGLWDVISSEAACQLVRRSLHGQIKRVSNAVGRQNRATEAAALLVEIAMAKGSRDNTSVIVIELNRTSSSS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120949g00008 380 ProSiteProfiles PPM-type phosphatase domain profile. 107 373 IPR001932 -
Stsc120949g00008 380 ProSitePatterns PPM-type phosphatase domain signature. 140 148 IPR000222 GO:0043169
Stsc120949g00008 380 SMART PP2C_SIG_2 121 373 IPR001932 -
Stsc120949g00008 380 MobiDBLite consensus disorder prediction 81 100 - -
Stsc120949g00008 380 Pfam Protein phosphatase 2C 110 366 IPR001932 -
Stsc120949g00008 380 PANTHER PROTEIN PHOSPHATASE 87 372 IPR015655 GO:0004722|GO:0006470
Stsc120949g00008 380 CDD PP2Cc 107 373 IPR001932 -
Stsc120949g00008 380 SUPERFAMILY PP2C-like 105 374 IPR036457 -
Stsc120949g00008 380 SMART PP2C_4 95 371 IPR001932 -
Stsc120949g00008 380 FunFam Protein phosphatase 2C 51 100 380 - -
Stsc120949g00008 380 Gene3D - 102 379 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120949g00008 Stsc-Chr120949 46177 50286 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120949g00008 108 375 PP2C-type Phosphatase Gene Family AT2G29380 51.220 1.16e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120949g00008 K14497 - gmx:100807235 518.079