Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120949g00007 ATGGACAAGTACGAGAAGTTGGAGAAGGTTGGGGAAGGAACATATAGCAAAGTGTACAAGGCAAAAGAGAAGGCCACTGGACAAATTGTTGCATTGAAGAAGACACGGTTGGTGGTGGATGAAGAAGGTGTCCCTCCCACCGCCCTCAGAGAGATCTCCCTCCTCAAAATGCTCTCTCAATCCATCTACGTTGTCCGCCTTTTAGCCGTCCAGCATGTGGACAAGGTCCCTAAGTCCGCCCCAGCCTTAGCCTCCGCCTCCACCGCCACTAAGCGCCTTCTCTACCTTGTCTTTGAGTACCTTGATACTGACCTCAAGAAGTTCATTGATTCCCACCGCAAGGGCCCCAATCCAACGGTACTTCCTCCTGCCCTAATCCAGAGCTTCCTTTTCCAGCTATGCAAGGGTGTTGCACATTGTCATGGCCATGGTGTCCTTCACCGTGACCTCAAGCCTCAGAACCTCCTCCTTGACCAGAAAAAGGGAATTCTCAAGATTGCTGATCTTGGACTCGGACGAGCCTTCACTGTCCCTCTCAAGACTTACACTCATGAAATTGCCACCCTTTGGTATAGAGCTCCTGAGGTCTTGCTTAGAACCACCCAGTACTCAACTGGGGTTGACATGTGGTCTGTTGGATGCATCTTTGCTGAAATGGTGAGAAGGCAAGCTCTATTTCCTGGGGATTCTGAGTTCAAACAGCTTCTGACCATATTCAAGTATGACTATCACTCTCCAATTATCATTCTACTGACTTATAACTTCCGTGCCTAG 774 0.4922 MDKYEKLEKVGEGTYSKVYKAKEKATGQIVALKKTRLVVDEEGVPPTALREISLLKMLSQSIYVVRLLAVQHVDKVPKSAPALASASTATKRLLYLVFEYLDTDLKKFIDSHRKGPNPTVLPPALIQSFLFQLCKGVAHCHGHGVLHRDLKPQNLLLDQKKGILKIADLGLGRAFTVPLKTYTHEIATLWYRAPEVLLRTTQYSTGVDMWSVGCIFAEMVRRQALFPGDSEFKQLLTIFKYDYHSPIIILLTYNFRA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120949g00007 257 FunFam Cyclin-dependent kinase 4 1 102 - -
Stsc120949g00007 257 SUPERFAMILY Protein kinase-like (PK-like) 1 241 IPR011009 -
Stsc120949g00007 257 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Stsc120949g00007 257 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120949g00007 257 Gene3D Transferase(Phosphotransferase) domain 1 104 247 - -
Stsc120949g00007 257 SMART serkin_6 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120949g00007 257 Pfam Protein kinase domain 4 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120949g00007 257 PANTHER CELL DIVISION PROTEIN KINASE 1 239 - -
Stsc120949g00007 257 FunFam Mitogen-activated protein kinase 101 247 - -
Stsc120949g00007 257 Gene3D Phosphorylase Kinase; domain 1 1 102 - -
Stsc120949g00007 257 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120949g00007 Stsc-Chr120949 43023 43929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120949g00007 1 240 Core Cell Cycle Gene Families AT3G54180 78.333 3.11e-135 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Stsc120949g00007 Pkinase 9.1e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120949g00007 K07760 - qsa:O6P43_016425 405.601