Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120948g00011 ATGATGGCAACGCTCTTCAGAAAACTCTGCGTCTGTGAAACGACGTCGTCCAACTCCAACTCCAACTCCAACAACCACAACCACCAATCCTCATCCGAACCTCCTCCTTCTTGTTCTGGTTCGTTGTTGGAATCACTCCCGAGCGAGATTGTGATTCAGATCGTTCGGTTATTGGGCCCAAAGCAGGCCGCGCAGCTGAGCGTGCTTAGCAGAAAGTGGCGATCCCTAATCTCCTCCGATAACCAACTGTGGGCCCACTTTCTTGAGGCCCACTCTCCTCAGCCTTGGGACTCCCTTCTCTTCTCTGAGACTTTTTTGACCGATGCTTACCCTCTTCCTCTTCCAACCTCAGTTGCTCAGATGCAATCTGTGTCATTCAAGAAAGTTTACGGCCAGCGTGCAAGGCTGCCTTGTTCTGTTATCATCGATGGTGGTTCTGGCTATTGCAAATATGGTTGGAGCACACTCTCAAGTCCATCGTGGCGATCAGCTACCTTTCTGCAGGAATTCGGTAATGTGGAAACGCCGATATACACTAGACTCCGACACTTCTTTTGGACTATTTATAGCAGGATGCAGACGAAACCGAGTTCTCAACCAGTTGTTGTTTCTATACCAATATGCCACTATGATGATACCGAATCAGCCAAAGCGTCGAGGCGGCAGCTTAAGGAAGCAATCTATACTGCTCTGTTTGACATGAATGTTCCTGCCGTTTGTGCTCTAAATCAGGCGGTTCTAGCTCTTTATGCTGCCGAACAAACTTCTGGAATAGTTGTGAATATAGGTTTTCAAGTCACATCTGTTGTTCCAATTTTAAATGGTAAAGTGATGCGAAAGGTGGGTGTGGAGGTTGTGGGGTTGGGAGCACTAAAGCTCACTGGATTCCTTAGAGAACAACTGCAACTGAATAACATGAATTTCGATTCTATGTACACTGTTCGTATGCTGAAAGAGAAGCTATGCTATGTTGCTATTGATTATGAAGCAGAGCTGTCTAAAGATACACAAGCATCATTTGAAGCTGCAGGAGAGGGATTGTTTATACTTAAAAAAGAGCGATTTCAAACCGGAGAGATCTTATTCCAGCCGCGTCTTGCCGGGGTGCGAGCAATGGGTTTGCACCAGGCCGTCGCTCTATGTATGGACCATTGCCATTCCGCAGAATTAACGGAGGACACGAATTGGTTTAAGACCGTCGTCTTATGTGGGGGCAGTGCATGTTTACCAGGTTTGCCGGAAAGATTAGAGAAAGAACTTCATGGCTTGCTTGATCCCGATATGTCGGACGGAATCAGAGTCTTACCTCCTCCGTATGGCGCAGATTCTGCATGGTTTGGAGCAAAGATGATTGGCAATTTAAGTACCTTTCCTGGTCCATGGTGCATAACCAAGAAGCAGTTCCGTCAAAAGCATAAGACCAATCGGATATGGTGA 1437 0.4676 MMATLFRKLCVCETTSSNSNSNSNNHNHQSSSEPPPSCSGSLLESLPSEIVIQIVRLLGPKQAAQLSVLSRKWRSLISSDNQLWAHFLEAHSPQPWDSLLFSETFLTDAYPLPLPTSVAQMQSVSFKKVYGQRARLPCSVIIDGGSGYCKYGWSTLSSPSWRSATFLQEFGNVETPIYTRLRHFFWTIYSRMQTKPSSQPVVVSIPICHYDDTESAKASRRQLKEAIYTALFDMNVPAVCALNQAVLALYAAEQTSGIVVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREQLQLNNMNFDSMYTVRMLKEKLCYVAIDYEAELSKDTQASFEAAGEGLFILKKERFQTGEILFQPRLAGVRAMGLHQAVALCMDHCHSAELTEDTNWFKTVVLCGGSACLPGLPERLEKELHGLLDPDMSDGIRVLPPPYGADSAWFGAKMIGNLSTFPGPWCITKKQFRQKHKTNRIW 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120948g00011 478 Gene3D - 140 472 - -
Stsc120948g00011 478 ProSiteProfiles F-box domain profile. 40 87 IPR001810 GO:0005515
Stsc120948g00011 478 SMART fbox_2 46 87 IPR001810 GO:0005515
Stsc120948g00011 478 MobiDBLite consensus disorder prediction 16 41 - -
Stsc120948g00011 478 SUPERFAMILY Actin-like ATPase domain 140 260 IPR043129 -
Stsc120948g00011 478 Gene3D - 245 443 - -
Stsc120948g00011 478 SUPERFAMILY Actin-like ATPase domain 255 469 IPR043129 -
Stsc120948g00011 478 SUPERFAMILY F-box domain 41 117 IPR036047 GO:0005515
Stsc120948g00011 478 Gene3D Actin; Chain A, domain 4 288 371 - -
Stsc120948g00011 478 Gene3D - 29 110 - -
Stsc120948g00011 478 Pfam Actin 188 469 IPR004000 -
Stsc120948g00011 478 CDD NBD_sugar-kinase_HSP70_actin 140 285 - -
Stsc120948g00011 478 PANTHER ACTIN 185 472 IPR004000 -
Stsc120948g00011 478 SMART actin_3 137 476 IPR004000 -
Stsc120948g00011 478 Pfam F-box-like 44 86 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120948g00011 Stsc-Chr120948 83129 87595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120948g00011 187 470 Cytoskeleton Gene Families AT3G12110 30.717 8.48e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120948g00011 K16616 - gmx:100804254 662.529