Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120948g00007 ATGTTATCCTCATCTTTCTCTTCACCTCTCGCCGCCAATCTCTCATCTTCGCCGCGCCACCTCAGATCCCGTCCAACACTCTCCGCCGGAGCTTCCACTCCTCCGGCACCGGACCATCAACGATCATCGACTTTTTCTCTCTCCTCAACTGCGTCGTTTTACGATATCCTCGGAATCCCCGCATCCGCCTCGATCCTCGAGATCAAGGCTGCGTACCGCCGACTCGCCAGGATCTGCCACCCCGACGCCGCCGCGGTTACCGCCAATCGGAGCGGCTCGTCCTCGGCGGACGAGTTCATGAAGCTCCATGCTGCTTATTCTACGTTATCGGATCCTGAGAAGCGCGCAAGCTACGATAGAAGCTTGCATCAGCGGCGGCAGGTTCCACTGACGGCGGCGACGACGGAGTCGAGGTTTTCTGGTTACGGTGGGCGGAGGTGGGAAACGGATCAGTGCTGGTAG 462 0.5931 MLSSSFSSPLAANLSSSPRHLRSRPTLSAGASTPPAPDHQRSSTFSLSSTASFYDILGIPASASILEIKAAYRRLARICHPDAAAVTANRSGSSSADEFMKLHAAYSTLSDPEKRASYDRSLHQRRQVPLTAATTESRFSGYGGRRWETDQCW 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120948g00007 153 CDD DnaJ 53 111 IPR001623 -
Stsc120948g00007 153 PRINTS DnaJ domain signature 72 87 IPR001623 -
Stsc120948g00007 153 PRINTS DnaJ domain signature 114 133 IPR001623 -
Stsc120948g00007 153 PRINTS DnaJ domain signature 94 114 IPR001623 -
Stsc120948g00007 153 PRINTS DnaJ domain signature 54 72 IPR001623 -
Stsc120948g00007 153 SMART dnaj_3 51 114 IPR001623 -
Stsc120948g00007 153 Pfam DnaJ domain 53 119 IPR001623 -
Stsc120948g00007 153 ProSiteProfiles dnaJ domain profile. 52 122 IPR001623 -
Stsc120948g00007 153 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 14 153 - -
Stsc120948g00007 153 MobiDBLite consensus disorder prediction 1 44 - -
Stsc120948g00007 153 SUPERFAMILY Chaperone J-domain 48 127 IPR036869 -
Stsc120948g00007 153 ProSitePatterns Nt-dnaJ domain signature. 99 118 IPR018253 -
Stsc120948g00007 153 Gene3D DnaJ domain 38 138 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120948g00007 Stsc-Chr120948 54757 55218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120948g00007 43 124 C2H2 Transcription Factor Family AT1G74250 39.024 3.21e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120948g00007 - - adu:107478883 214.927