Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120948g00004 ATGGCGGAAGAGAGGTTCACTGGCGTTGTTCAGTGGTTCAACAACACCAAAGGCTTCGGCTTCATCAAGCCCGACGATGGCGGCGAAGATCTCTTCGTCCACCAGTCTTCCATCAGATCCGACGGTTACCGCACTCTCCACGAAGGCGATCGCGTCCAGTTCTCCATCGCCACCGGTGACAACCACAAGACAAAGGCCGTTGATGTAACTGCTCCCGACGGCAATCCGTTACACTCTCGTCCCAAGGAATCCGGCGGATCCGGATTTGGCGCAGGATGGAGGCGAAACGGCGCCGCCGCTGGATCAGGTGGTGCTGGCTGCTACCACTGCGGCGATCTCGGACACCTCGCTAGGGATTGCAACCGGAGCAATAGTTCTGGTGGTGCAGGTGGCGGTAGCGGTGGTGCATGTTTTAATTGCGGCGGATTTGGTCATCTCGCTAGGGATTGCTTGCGAGGAAGCGGTGGCGGTAGCGGTAATGGTCACGGCGGCGGCGGTGGTGGTGGAGGAGTTGTCGGTGGCGTTTCGTGCTTTAGATGCGGCGGATTTGGTCACATGGCGAGGGACTGTGCTACCGCAAGGGGAACTGGCGGCGGCGCAGGTGGCGGCGGCGGCGGAGGTGGTGGTGGTTGCTATAGGTGCGGTGAGGTTGGTCACTTGGCTAGGGATTGCAGCAATGAAGGTGGAAGGTACGGTGGCGGAGGCGGTGGTGGCGGCAATGGTAATGGTTCTAGAAGCACTTGCTTCAATTGTGGTAAGCCTGGGCATTTTGCAAGGGAGTGCGTTGAAGCTTCTGGTTGA 801 0.5918 MAEERFTGVVQWFNNTKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLHEGDRVQFSIATGDNHKTKAVDVTAPDGNPLHSRPKESGGSGFGAGWRRNGAAAGSGGAGCYHCGDLGHLARDCNRSNSSGGAGGGSGGACFNCGGFGHLARDCLRGSGGGSGNGHGGGGGGGGVVGGVSCFRCGGFGHMARDCATARGTGGGAGGGGGGGGGGCYRCGEVGHLARDCSNEGGRYGGGGGGGGNGNGSRSTCFNCGKPGHFARECVEASG 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120948g00004 266 Gene3D - 168 235 - -
Stsc120948g00004 266 MobiDBLite consensus disorder prediction 66 88 - -
Stsc120948g00004 266 SUPERFAMILY Retrovirus zinc finger-like domains 169 227 IPR036875 GO:0003676|GO:0008270
Stsc120948g00004 266 ProSiteProfiles Zinc finger CCHC-type profile. 248 261 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 PANTHER COLD SHOCK DOMAIN PROTEIN 2 194 263 - -
Stsc120948g00004 266 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Stsc120948g00004 266 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Stsc120948g00004 266 SUPERFAMILY Retrovirus zinc finger-like domains 97 152 IPR036875 GO:0003676|GO:0008270
Stsc120948g00004 266 ProSiteProfiles Zinc finger CCHC-type profile. 211 226 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 SMART csp_8 7 72 IPR011129 GO:0003676
Stsc120948g00004 266 ProSiteProfiles Zinc finger CCHC-type profile. 107 120 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Stsc120948g00004 266 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Stsc120948g00004 266 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Stsc120948g00004 266 Pfam Zinc knuckle 210 225 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 Pfam Zinc knuckle 136 150 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 Pfam Zinc knuckle 106 120 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 Pfam Zinc knuckle 247 261 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 Pfam Zinc knuckle 176 191 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 SUPERFAMILY Retrovirus zinc finger-like domains 230 262 IPR036875 GO:0003676|GO:0008270
Stsc120948g00004 266 Gene3D - 1 83 IPR012340 -
Stsc120948g00004 266 SMART c2hcfinal6 247 263 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 SMART c2hcfinal6 210 226 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 SMART c2hcfinal6 106 122 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 SMART c2hcfinal6 176 192 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 Gene3D - 91 155 - -
Stsc120948g00004 266 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Stsc120948g00004 266 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Stsc120948g00004 266 Gene3D - 239 266 - -
Stsc120948g00004 266 ProSiteProfiles Zinc finger CCHC-type profile. 177 190 IPR001878 GO:0003676|GO:0008270
Stsc120948g00004 266 SUPERFAMILY Nucleic acid-binding proteins 4 75 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120948g00004 Stsc-Chr120948 35454 36254 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Stsc120948g00004 CSD 2.2e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120948g00004 K09250 - gmx:106796585 320.472