Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120947g00003 ATGAACATTATGATCGATTCCGCGCTCCTCCTCCATTTCCTTGTTCCCTCTCTTTGGGAGATCAAAGTCTCCGTCGTCGCTTCATTCGTCGTCATACTCGCTTACTCCTTCTTCACTTTCCGTACCGGCGACTCCGACGATGTCGCCGACCGATCACTCTCCGACAATCCCGCAATCGACGGTTCCGACGACAAAGAGAAGATCATATTGAAAGGAGATTCTCAAGGTGGTTCGGCCTACCTCATCAAGTTAGAACTATTGGCTGCTAAGAATCTAGTTGGAGCAAACTTAAATGGAACATCGGATCCTTATGTTATCATCACCTGCGGGAATGAAAAGCGATTCAGTTCCATGGTCCCTGGTTCAAGAAATCCTATGTGGGGTGAGGAATTCAATTTTTCTGTTGATGAGCTTCCTGTTCAGATCAATGTAACGATATATGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCAGTGACTGTTCCAGTTGAAAGAGAAGGTCAAACGGGTGCCGTATGGTACTCTTTGGATAGCACATCAGGGCAGGTTTGTCTTCATATAAAGACAATAAAACAATCTGCAAACTCTACCAGGATAAATGGTTTTGGTGGACCCAGCACTCGAAGAAGGATGCCTGTGGAAAAAGTGGGCCCCACTGTTGTTCATCAAAAGCCAGGGCCTCTTCAAACAATATTTGATCTTCTTCCAGATGAGGTGGTTATTCCATTTGAGGACATAGATGAGATTCGAAGAAGTCAACATGCATTTATAAATCCTGCTATAACAATTATTCTCCGCATGGGTGCTGGTGGACATGGTGTTCCTCCTTTGGGAAGTCCTGATGGTAGAGTCAGGTATAAGTTTGCCTCATTTTGGAATAGGAATCATGCATTTAGGAATCTACAACGTGCAGCAAATAATTTCCATGAAATGTTGGAAGCCGAGAAGAAGGAAAATGCAGAGTCTGAGCTGCGAGCACATAGCAGTTCTGTCAGAGGAACTAGGATACTTGATAATGTTCCTGAAGAAAGCATGCCAAAAACCGGAAAACTTCAACCTTTTACCAAAGAAGAGGCTTTAGTTGGTATATATAATGGTGTTTTTCCTTGCACAGCTGAGCAGTTTTTTAACTTACTATTAAATGATGGATCGCAATTTATTAGCAAGTATCGTGCAGTACGAAAGGACACTAATCTTGTGATGGGACAGTGGCATACAGCAGAAGAATATGATGGTCAAGTTCGAGAAATAACCTTCAGATCCCTCTGTAACAGCCCTATGTGCCCTCCAGACACAGCAATGACAGAATGGCAACATCATGTTTTATCACCAGACAAGAAAAAACTGGTGTTTGAGACTGTACAGCAAGCTCATGATGTTCCATTTGGGTCGTATTTTGAGGTACACTGTAAATGGGTTCTCGAGACAACAAATGAAAGCTCATGTACTTTGGACATAAGAGTGGGTGCTCATTTTAAGAAATGGTGTGTGATGCAATCCAAGATAAAGTCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGAGGTGATGTTGGAGGTTGCTCGTTCGTACATAAAGTCCCATACTAATGATGATGTGACTGATATGGAATCTTCGCCTCCTGCGGTGGTGACGCTGGAAAACTAA 1653 0.4283 MNIMIDSALLLHFLVPSLWEIKVSVVASFVVILAYSFFTFRTGDSDDVADRSLSDNPAIDGSDDKEKIILKGDSQGGSAYLIKLELLAAKNLVGANLNGTSDPYVIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVEREGQTGAVWYSLDSTSGQVCLHIKTIKQSANSTRINGFGGPSTRRRMPVEKVGPTVVHQKPGPLQTIFDLLPDEVVIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHAFRNLQRAANNFHEMLEAEKKENAESELRAHSSSVRGTRILDNVPEESMPKTGKLQPFTKEEALVGIYNGVFPCTAEQFFNLLLNDGSQFISKYRAVRKDTNLVMGQWHTAEEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLSPDKKKLVFETVQQAHDVPFGSYFEVHCKWVLETTNESSCTLDIRVGAHFKKWCVMQSKIKSGAVNEYKKEVEVMLEVARSYIKSHTNDDVTDMESSPPAVVTLEN 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120947g00003 550 ProSiteProfiles C2 domain profile. 62 178 IPR000008 -
Stsc120947g00003 550 PRINTS C2 domain signature 142 150 IPR000008 -
Stsc120947g00003 550 PRINTS C2 domain signature 97 109 IPR000008 -
Stsc120947g00003 550 PRINTS C2 domain signature 121 134 IPR000008 -
Stsc120947g00003 550 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 80 191 IPR035892 -
Stsc120947g00003 550 ProSiteProfiles VASt domain profile. 361 531 IPR031968 -
Stsc120947g00003 550 SMART C2_3c 81 177 IPR000008 -
Stsc120947g00003 550 CDD C2 82 178 - -
Stsc120947g00003 550 Coils Coil 300 320 - -
Stsc120947g00003 550 Gene3D C2 domain 72 194 IPR035892 -
Stsc120947g00003 550 Gene3D - 231 309 IPR011993 -
Stsc120947g00003 550 Pfam VAD1 Analog of StAR-related lipid transfer domain 365 510 IPR031968 -
Stsc120947g00003 550 Pfam C2 domain 83 178 IPR000008 -
Stsc120947g00003 550 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 241 540 IPR044655 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120947g00003 Stsc-Chr120947 5779 13358 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120947g00003 81 166 C2H2 Transcription Factor Family AT4G21160 26.744 7.91e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120947g00003 - - gmx:100789923 902.508