Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120946g00006 ATGGCAACTTTAGTTGAGCCTCCTAACAAAATTAAGCCAAAGGGGAAGCATTATTATACAATATGGCAAACATTGTTTGAGATTGATACCAAGTACATTCCAATCAAGCCGATTGGCCGAGGTGCGTATGGCGTGGTTTGCTCTTCCATCAATAGGGAGACTAATGAGAAGGTGGCAATCAAGAAGATTGGCAATATCTTCGATAACTGTATTGATGCACTGAGGACTTTGAGAGAGGTGAAGCTGCTAAGGCATATCCGGCACGAGAATGTCATTGCTCTGAAGGATGTGATGATGCCAATCCAGAGAGCGAGCTTTAAGGATGTTTACTTGGTCTATGAACTCATGGATACTGATCTTCATCAAATTATTAAGTCTTCGCAGCCACTCTCCAATGATCATTGCAAATATTTCTTGTTTCAGCTGCTTCGAGGTCTCAAATACCTTCATTCTGCGAATATTCTGCACCGGGACTTGAAACCTGGAAATCTGCTAGTTAATGCCAATTGTGATTTGAAGATATGTGACTTTGGCCTTGCACGAACCAATGGAGCTGAGGGCCAGTTCATGACAGAGTATGTTGTCACCCGCTGGTATCGTGCTCCGGAGCTCCTGCTTTGCTGCNNNNNNNNNNCCTCTATTGATGTATGGTCAGTGGGATGCATTTTTGCTGAGATTCTTGGAAGAAAGCCAATCTTCCCCGGAAGCGAGTGCCTCAACCAGCTGAAACTGATCATAAGTGTTCTTGGAAGCCAGCATGAGTCTGATCTTGCTTTTATTGATAACCCGAAGGCCAGGAGGTTTATCAGATCACTGCCTTATACAAGGGGTAGACACTTTGCTCAACTTTTTCCACAAGCCGACCCATTAGCAATCGATTTGTTGCAAAAAATGCTAGTATTCGATCCAACTAAGAGAATTACTGTCTTAGAAGCACTCCAGCACCCTTATATGGCTGGCCTATATGATCCAAGACTTAACCCTCCTGCTCAAGTTCCAGTCAATCTTGACATAGACGAAAACTGGGGCGAACAGATGATTAGAGAAATGATGTGGAATGAGATGCTTCAGTATCATCCTGAAGCTGCTTCTGCCAATGTTTAA 1104 0.4321 MATLVEPPNKIKPKGKHYYTIWQTLFEIDTKYIPIKPIGRGAYGVVCSSINRETNEKVAIKKIGNIFDNCIDALRTLREVKLLRHIRHENVIALKDVMMPIQRASFKDVYLVYELMDTDLHQIIKSSQPLSNDHCKYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTNGAEGQFMTEYVVTRWYRAPELLLCCXXXXSIDVWSVGCIFAEILGRKPIFPGSECLNQLKLIISVLGSQHESDLAFIDNPKARRFIRSLPYTRGRHFAQLFPQADPLAIDLLQKMLVFDPTKRITVLEALQHPYMAGLYDPRLNPPAQVPVNLDIDENWGEQMIREMMWNEMLQYHPEAASANV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120946g00006 367 CDD STKc_TEY_MAPK 26 360 - -
Stsc120946g00006 367 SMART serkin_6 32 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120946g00006 367 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 32 331 - -
Stsc120946g00006 367 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Stsc120946g00006 367 FunFam Mitogen-activated protein kinase 18 126 - -
Stsc120946g00006 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Stsc120946g00006 367 Gene3D Transferase(Phosphotransferase) domain 1 116 344 - -
Stsc120946g00006 367 FunFam Mitogen-activated protein kinase 116 344 - -
Stsc120946g00006 367 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Stsc120946g00006 367 Pfam Protein kinase domain 35 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120946g00006 367 SUPERFAMILY Protein kinase-like (PK-like) 24 325 IPR011009 -
Stsc120946g00006 367 Gene3D Phosphorylase Kinase; domain 1 19 354 - -
Stsc120946g00006 367 ProSiteProfiles Protein kinase domain profile. 32 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120946g00006 Stsc-Chr120946 22228 25952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120946g00006 1 367 MAP Kinase Gene Family AT2G18170 82.337 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Stsc120946g00006 Pkinase 1.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120946g00006 K20537 - gmx:100783422 690.649