Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120945g00012 ATGCAAATGGTTGTTTCATCATTTGAGTCAGTGGCAGGCCTCAATTCTGCTACCCCTTACGCTTCCTTGGCCCTCAAGTTAGTAACAAAGAACTTCAAGTCCCTAAATAACTCCATCTCCGATCAGCTTAAGCTTTTATGCCAAGCCATGGGAGAGGATTCCACAATTCCACTCGCCGCGAATGCTAGTAGCCAATTCGAGTCGAACGCAGCGAGGTTTAGGGTTATGGACCAAACCTTACATAGGAACAAACCCGGTGGTGGTAGTGGTGGTGGTAATATGGACTTTGAACCCCAACAACATGTATGGAGGCCGCAGCGTGGCTTACCGGAGCGCGCGGTGGCAATCCTTAAATCATGGTTGTTTGAGCATTTTCTTCATCCGTACCCTACGGACACTGATAAACACATGCTAGCTACTCAAACTGGTCTCTCAAGAAATCAGGTATCAAATTGGTTCATAAATGCTAGAGTCCGGGTATGGAAGCCAATGGTTGAGGAAATCCACATGCTTGAAACAAAAGGTGCCAATCAAATTTCTAGCAATAGAATGGGTGAGGGAACTTCTTCAGCCACCAATGATGGAAGCAACCATGCCAAACTATTAGTCGATCAACCTCTCAACAAGTTCGCCGGCGCGCACACGGCGGCGAACCCTAATTCGGGAAGGCAATTTCAGTGTTTGGAAATGGGATCATCATCATCGTTGGCCAATGCCAACGAGGAAAATGATGACCTACAACAACATGAAGAGGTACTATGGAGTCAAGAAAAGAGGTCTAAATTGGAATCCATGGATGGGACATTGATCGGGTTGATGCCGTACCGCCGAACCGGCGGTGGCGGTGGCGAGTTTGGAGGACTTGGACCTGTGTCACTAACCTTGGAACTAAGGCATGGAGTTGAAGGTTCACAACAACAAATACAAGGTCATGAGGAGCAACTTAGGCACCATTTTGGAGGGATGATTTCTTAG 975 0.4728 MQMVVSSFESVAGLNSATPYASLALKLVTKNFKSLNNSISDQLKLLCQAMGEDSTIPLAANASSQFESNAARFRVMDQTLHRNKPGGGSGGGNMDFEPQQHVWRPQRGLPERAVAILKSWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGANQISSNRMGEGTSSATNDGSNHAKLLVDQPLNKFAGAHTAANPNSGRQFQCLEMGSSSSLANANEENDDLQQHEEVLWSQEKRSKLESMDGTLIGLMPYRRTGGGGGEFGGLGPVSLTLELRHGVEGSQQQIQGHEEQLRHHFGGMIS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120945g00012 324 Pfam Homeobox KN domain 120 159 IPR008422 GO:0003677|GO:0006355
Stsc120945g00012 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 190 - -
Stsc120945g00012 324 CDD homeodomain 103 164 IPR001356 GO:0003677
Stsc120945g00012 324 Pfam Associated with HOX 1 40 IPR006563 -
Stsc120945g00012 324 Gene3D - 106 168 - -
Stsc120945g00012 324 SUPERFAMILY Homeodomain-like 105 169 IPR009057 -
Stsc120945g00012 324 ProSiteProfiles 'Homeobox' domain profile. 100 163 IPR001356 GO:0003677
Stsc120945g00012 324 FunFam BEL1-like homeodomain protein 9 106 168 - -
Stsc120945g00012 324 SMART HOX_1 103 167 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120945g00012 Stsc-Chr120945 82653 84303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120945g00012 1 173 Homeobox Transcription Factor Family AT5G02030 56.425 1.34e-55 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc120945g00012 POX 6.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120945g00012 - - aip:107629241 448.743