Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120945g00008 ATGATTCACCTTTGGTTTGTGTCCATAATTTGCATTAGTGTATGCTATGCTCAGCAACATTATGATCCTTATAGTTGCAATTATGATGATACAATTTCAGGTTCAAGATACACTTGCAATTCAACAAACCATTCATGCAAAACATTCTTGGTTTACAAAGCCAACAAAAGCTTTCAAACCATTTCAAATATCTCAGCATTGTTCAACATAAAAACTCATGATGTTCTTGTACTAAACAACCTCAAATCTTCTTCTAATGATGTGTTAGAAGAAGGTAAAGAGGTTATTGTTCCTATTAACTGCACATGCATTGGCCAATTTTACCAGGTTAATGGTTTCACCTATGGAGTCACTCATAACACCACTTTTTATGATGTTGCATGCCAAGTGTTTGAAGGATTGCTTAGTCCAGTAACACTTTCAGAGGAGAATGTTCCACTTGGGAATAAACTAGATTCTGGTTTTGAGATTAAGATTCCTCTTAGATGTGCATGTGTTGATGATGTCATTAGGAGCATGATGGAGGTCAAGTACCTTGTCACATACCCTGTTGTTGTAGGTGATGATCCTGCTAAATTGGCCAAGAAATTTGGTGTCCCAGTTGATGATCTCTATGCAGCTAATGGCTTGAATGGTTGGTCAACCATTTTCCCAAATACATCTGTTTTGATTCCAATAAGGGATGTTCCAATCAAAATCTTTGATGTTCAAGATTCTCCTTCTCCACCTCCTGTTTTTCTTCCTACAAACCCAGTGGTTGAGGGAGATGAAACCCAAGGTTCCAATTTGTTTATTGCAGGGCCTATTATAGGATTTGGTTTGTTCATAGCATTGCTTGCAAGTGGATTATATGTTAAGCGCTTGAAGAAATGGAAAAATGATGCTGTTGTCCCCTCCAATGATTCAAACTCCACCAACCTGACATGCTCAACGACCGGAAGCTCTCCTATGTATATGAAAACCGGCAGAAGATCCTCCACGGCTTCGTGTCTGACGCCGGATCTTCTGGCAGAAATTAAGTACTGCTTGGTTAACTACAGCATAGAGGAGATTGAGAAGGCCACCAAGAATTTCAGTGAAGAAAACAAGATTGGTGGTGATTTGGCCTATAAGGGATTGCTCAATAATCTTGAGGAGGTGATGGTAAAGAGGATGAGGCTTGAAGACACAGGACAGGTAATTGATTTGCATTCTAAGATCAACCACTTTAACATTGTGGAATTGCTTGGTGTTTGTTATGGTAGTGAGAGCAAAGTTTCTTCATCACCATCATCATCATGGTCTTATCTGGTTTTTGAATTGCCTAAAAATGGTTGCTTAAGGGATTGTTTATCTGATCCATGCAATAATCTAAACTGGTACAAAAGGATTCAAATTGCTTTTGATATTGCAACATGTCTTTACTATTTACATTGCTGTGCTTTCCCTTCATATGCTCACATGAATGTCAATAGTAGAAACATATTCATAACTTCAAAATGGAGGGGGAAGCTAGCAGATGTTGGTAGAGCAGTGGCTATAAATGATGCCAAACCCCAAAAGACAAATGAGAGTGTAGAACTTGTTAAAGGATGGGTAGCACCAGAGTATCTCTTGAATAGGACAGTTTCTGAGAAAGTTGACATTTTTGCATTTGGGGTTGTGTTGCTTGAGTTGATCTCAGGAAGGGACAATTTTGATGGGAAAACAGTGAAAGATTCACTTGGATTTTTGTTGGGGGAATCAGGTGAAGGTGGTTGTTTTGAAGGGTTGAGGAGTTTCATGGATCCTAATCTGAAGGATTATGATCTCCCAGAAGCTTTGTGTTTGTCTTTCTTGGCAAAGGATTGTGTTGCAGATGATCCAATGTATAGACCAACTATGGATGGTATCATGAAAGTCCTTTCAAAAATGGCTTAA 1899 0.3876 MIHLWFVSIICISVCYAQQHYDPYSCNYDDTISGSRYTCNSTNHSCKTFLVYKANKSFQTISNISALFNIKTHDVLVLNNLKSSSNDVLEEGKEVIVPINCTCIGQFYQVNGFTYGVTHNTTFYDVACQVFEGLLSPVTLSEENVPLGNKLDSGFEIKIPLRCACVDDVIRSMMEVKYLVTYPVVVGDDPAKLAKKFGVPVDDLYAANGLNGWSTIFPNTSVLIPIRDVPIKIFDVQDSPSPPPVFLPTNPVVEGDETQGSNLFIAGPIIGFGLFIALLASGLYVKRLKKWKNDAVVPSNDSNSTNLTCSTTGSSPMYMKTGRRSSTASCLTPDLLAEIKYCLVNYSIEEIEKATKNFSEENKIGGDLAYKGLLNNLEEVMVKRMRLEDTGQVIDLHSKINHFNIVELLGVCYGSESKVSSSPSSSWSYLVFELPKNGCLRDCLSDPCNNLNWYKRIQIAFDIATCLYYLHCCAFPSYAHMNVNSRNIFITSKWRGKLADVGRAVAINDAKPQKTNESVELVKGWVAPEYLLNRTVSEKVDIFAFGVVLLELISGRDNFDGKTVKDSLGFLLGESGEGGCFEGLRSFMDPNLKDYDLPEALCLSFLAKDCVADDPMYRPTMDGIMKVLSKMA 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120945g00008 632 Gene3D Phosphorylase Kinase; domain 1 323 419 - -
Stsc120945g00008 632 ProSiteProfiles LysM domain profile. 180 224 IPR018392 -
Stsc120945g00008 632 SUPERFAMILY LysM domain 180 225 IPR036779 -
Stsc120945g00008 632 ProSiteProfiles Protein kinase domain profile. 264 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120945g00008 632 SUPERFAMILY Protein kinase-like (PK-like) 340 628 IPR011009 -
Stsc120945g00008 632 Pfam Protein tyrosine and serine/threonine kinase 392 567 IPR001245 GO:0004672|GO:0006468
Stsc120945g00008 632 Coils Coil 370 390 - -
Stsc120945g00008 632 Pfam LysM domain 184 225 IPR018392 -
Stsc120945g00008 632 SMART LysM_2 51 98 IPR018392 -
Stsc120945g00008 632 SMART LysM_2 181 225 IPR018392 -
Stsc120945g00008 632 Gene3D LysM domain 180 227 IPR036779 -
Stsc120945g00008 632 Gene3D Transferase(Phosphotransferase) domain 1 436 632 - -
Stsc120945g00008 632 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120945g00008 Stsc-Chr120945 63868 65814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120945g00008 4 631 Receptor kinase-like Gene Family AT2G23770 28.903 1.20e-66 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc120945g00008 PK_Tyr_Ser-Thr 2.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120945g00008 - - gmx:100818937 787.334