Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120945g00005 ATGAAGCTCAAGCTCGGAGTTGCTCTTGCTATCGTCTTCAGCTTGCTCTCGATTCCGCACTCGTCTTGTGATAAACCTTCTGATTCCTATGGCCTAAACAAGTGGAAATGCACATGTTCTTTCCAAGGGAACCAGAGTTACTCTATTGCAAATTGTTCCAAGTCATGTGACTGCCGTTCGGATGCTGGAGAGACTTCATCCATCTGGACATGCTTATGTAATCCCAATGGATTCCCCCAAATGGGAGTGGCGTCCGCAAATGGCCACAACCATAATTGCTTCAGTGCCTGCAACTGTAGCTGGGGAACTAACAGCTTGTCACTAGGATCGAAGAAACACGTCTCCAGCAAGACTGTTGTAGCTATTCTACTAATATGTGTTGTCTGTACGACCATCGCGTTTCTTACCTCTGTCCTATGCTATGTCTACCGAAGGGACAGATGTCCTATTCAATCGCCGATATTCTCACCGGATAAGGAAACATGTAGCGGTAGCACTACCAACTTAATTAGTCACAGGACAGTGACTTCTTCAGTGACAGAAACAAAATTTGTTCTTGATTCTCCGGTTAGTAATATGACAGGATGCTTTCAGAAAGCCTCTTTCTTGTTTGGGATCCAGAGAGAAACTTTTCATGGAAATATTATTCAATTTTCCTTTGCCGAACTAGAAAATGCCACCGAAAACTTTTTAGGTTCCAACTTAATTGGACTAGGTGGAAGTAGTTATGTATACCGTGGTCGTCTGAAAGATGGTAGTGTCGTGGCAGTTAAGCGACTAAAAGATCCAGGAGGGCCAGAAGCAGACTCTGCATTTTTCAAAGAGATTGAACTATTATCTAGACTTCATCATTGCCATTTGGTGCCTTTGCTTGGATACTGCTCAGAATTAAAAGGGAAACATTTTCAGAGGTTACTAGTATTCGAGTACATGTCTAATGGGAATTTGAGGGACTGGTTAGATGGAGTGTCTGCGAAAAATCTCGATTGGACCACACGTGTCACAGTTGCAATAGGAGCTGCAAGGGGCTTGGAATATCTCCATGAAGCGGCTGCTCCTAGAATTCTTCATAGAGATGTCAAATCAACAAACATTCTTCTTGATGAAAATTGCCAAGCAAAGATAACTGACCTTGGTATGGCTAAGAATGTGAGAGCGGATGATCACCCCAGCTGTTCGAATTCTCCGGCCAGAATGCAGGGAACATTTGGCTATTTTGCACCCGAGTATGCCATTGTTGGGCGAGCCTCTCTTGAATCGGATGTTTTCAGTTTCGGGGTGGTTCTACTTNNNNNNNNNNGCTTATTAGTGGTCGGCAACCAATCTATAAATCTTCGGGCAAAGAAGAAAGCCTTGTTATATGGGCTGCGCCTCGGTTACAGGATAGTAGGCGAGTAA 1398 0.4363 MKLKLGVALAIVFSLLSIPHSSCDKPSDSYGLNKWKCTCSFQGNQSYSIANCSKSCDCRSDAGETSSIWTCLCNPNGFPQMGVASANGHNHNCFSACNCSWGTNSLSLGSKKHVSSKTVVAILLICVVCTTIAFLTSVLCYVYRRDRCPIQSPIFSPDKETCSGSTTNLISHRTVTSSVTETKFVLDSPVSNMTGCFQKASFLFGIQRETFHGNIIQFSFAELENATENFLGSNLIGLGGSSYVYRGRLKDGSVVAVKRLKDPGGPEADSAFFKEIELLSRLHHCHLVPLLGYCSELKGKHFQRLLVFEYMSNGNLRDWLDGVSAKNLDWTTRVTVAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENCQAKITDLGMAKNVRADDHPSCSNSPARMQGTFGYFAPEYAIVGRASLESDVFSFGVVLLXXXXLLVVGNQSINLRAKKKALLYGLRLGYRIVGE 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120945g00005 465 Gene3D Transferase(Phosphotransferase) domain 1 311 440 - -
Stsc120945g00005 465 SMART serkin_6 230 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120945g00005 465 PANTHER OS01G0750732 PROTEIN 31 431 - -
Stsc120945g00005 465 ProSiteProfiles Protein kinase domain profile. 230 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120945g00005 465 FunFam receptor-like serine/threonine-protein kinase NCRK 204 310 - -
Stsc120945g00005 465 Gene3D Phosphorylase Kinase; domain 1 205 310 - -
Stsc120945g00005 465 SUPERFAMILY Protein kinase-like (PK-like) 211 431 IPR011009 -
Stsc120945g00005 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 355 367 IPR008271 GO:0004672|GO:0006468
Stsc120945g00005 465 ProSitePatterns Protein kinases ATP-binding region signature. 236 258 IPR017441 GO:0005524
Stsc120945g00005 465 FunFam Os07g0541700 protein 312 402 - -
Stsc120945g00005 465 Pfam Protein tyrosine and serine/threonine kinase 235 430 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120945g00005 Stsc-Chr120945 32574 36781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120945g00005 1 451 Receptor kinase-like Gene Family AT2G28250 50.661 1.60e-140 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Stsc120945g00005 PK_Tyr_Ser-Thr 3.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120945g00005 - - gmx:100817870 682.174