Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120945g00002 ATGATTCAGATCATCGTGAGGTATCGAACGGCTTATGTCGCGCCTTCTTCGCGTGTTTTCGGCCGAGGAGAGCTTGTTATAGACCCTGCAAAGATAGCAGCTAGGTACTTCTTCAAAGGTTTCTGGCTAGACTTCGCTGCCGCCTTGCCCCTTCCTCAAGTGCTGATCTGGATTGTGATCCCTAGTCTTGGGGGCTCAACCATGGCGAACACGAAAAACGTCCTTCGATTCATCATCATTTTTCAATATATACCAAGGCTGTTCCTGATTTTTCCACTTTCATCCCAAATCGTAAAGGCTACAGGGGTTGTGACAGAGACAGCATGGGCTGGTGCTGCTTATAACCTCATGCTTTACATGCTAGCTAGCCATTTTTTTGGAGCTTGCTGGTACCTGCTATCAATTGAGAGACAAGAAGCATGCTGGAGGAGAGTCTGTGATGAGAAAAACTCACATTGTAAACATAGTTTCTTTGACTGCAACATGGTTAAAAGTCCATTCAGGAAGTCATGGTTTCAAGGAAGTAATGTCACAAAGTTATGTTCTCCAGAAGCTAACTTTTATCCCTTTGGCATATATGGTGATGCAGTCACATCAAAAGTTACAACCTCACCATTCTTTAAAAAGTACTTCTATTGTCTTTGGTGGGGTCTCAGGAATTTGAGTTCTTTGGGGCAAAGTCTAATCACAAGCACTTTTGTTGGAGAAATAATGTTTGCCATTCTGGTTGCAACCCTTGGATTGGTTCTTTTTGCATTACTCATTGGTAATATGCAGACATTCCTTCAATCAACAACTGTGAGGTTAGAAGAGTGGAGGGTCAAAAGAACTGATACAGAACAATGGATGCATCATAGACAGCTTCCTCAAGAACTAAGACAGTCCATCCGAAAATATGATCAATATAAATGGCTGGCGACGCGAGGAGTAGACGAAGAAGCCCTTCTCAAAGATCTTCCGTTGGATCTTCGAAGAGACATCAAGCGCCACCTTTGTATCGAGCTAGTTCGACGAGTTCCATTGTTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTAAAGCCTGCATTGTGCACAGAGAGCACATATCTTGTCCGCGAGGGCGATCCGGTCAACGAGATGCTCTTCATAATAAGAGGAAATCTTGATTCCTACACAACCAATGGTGGCCGGACCGGATTCTTCAACTCGTGCCGGATCGGCCCTGGCGATTTCTGTGGCGAAGAACTCCTAACATGGGCCTTAGATCCAAAACCAAGTGTGATAATACTTCCTTGTTCCACAAGAACAGTTAAGGCCATATCAGAAGTAGAAGCATTTGCACTCATGGCAGAGGATTTGAAATTTGTTGCATCACAATTTAGAAGATTGCATAGCAAGCAACTTAGGCACAAGTTCAGGTTTCACTCACATCAATGGAGAACTTGGGCTGCATGCTTCATACAAGCTGCATGGAGAAGGTTCAAGAAGAGAAAAGAAGCTGCTGAATTGAGGGCAAAAGAGGAAGAAAATGAGGCTGAAACACATGCTACAATGGTGACAAGGAGCAATAGGAAGGGTATGAATGTAAATTCAGTTGCAGATTCTGAAGAAGTAAGCTCTTTACAGAAGCCAGCTGAACCAGACTTTTTTGTTGATGAATGA 1656 0.4342 MIQIIVRYRTAYVAPSSRVFGRGELVIDPAKIAARYFFKGFWLDFAAALPLPQVLIWIVIPSLGGSTMANTKNVLRFIIIFQYIPRLFLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHFFGACWYLLSIERQEACWRRVCDEKNSHCKHSFFDCNMVKSPFRKSWFQGSNVTKLCSPEANFYPFGIYGDAVTSKVTTSPFFKKYFYCLWWGLRNLSSLGQSLITSTFVGEIMFAILVATLGLVLFALLIGNMQTFLQSTTVRLEEWRVKRTDTEQWMHHRQLPQELRQSIRKYDQYKWLATRGVDEEALLKDLPLDLRRDIKRHLCIELVRRVPLFDQMDERMLDAICERLKPALCTESTYLVREGDPVNEMLFIIRGNLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPKPSVIILPCSTRTVKAISEVEAFALMAEDLKFVASQFRRLHSKQLRHKFRFHSHQWRTWAACFIQAAWRRFKKRKEAAELRAKEEENEAETHATMVTRSNRKGMNVNSVADSEEVSSLQKPAEPDFFVDE 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120945g00002 551 CDD CAP_ED 341 473 IPR000595 -
Stsc120945g00002 551 Gene3D - 1 265 - -
Stsc120945g00002 551 PRINTS EAG/ELK/ERG potassium channel family signature 254 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc120945g00002 551 PRINTS EAG/ELK/ERG potassium channel family signature 4 13 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc120945g00002 551 PRINTS EAG/ELK/ERG potassium channel family signature 121 131 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc120945g00002 551 PRINTS EAG/ELK/ERG potassium channel family signature 210 227 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc120945g00002 551 PRINTS EAG/ELK/ERG potassium channel family signature 236 247 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc120945g00002 551 PRINTS EAG/ELK/ERG potassium channel family signature 304 311 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc120945g00002 551 Gene3D Jelly Rolls 339 460 IPR014710 -
Stsc120945g00002 551 SUPERFAMILY Voltage-gated potassium channels 3 263 - -
Stsc120945g00002 551 FunFam Cyclic nucleotide-gated ion channel 1 339 458 - -
Stsc120945g00002 551 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 547 - -
Stsc120945g00002 551 FunFam Cyclic nucleotide-gated ion channel 1 268 332 - -
Stsc120945g00002 551 ProSiteProfiles IQ motif profile. 478 507 IPR000048 GO:0005515
Stsc120945g00002 551 ProSiteProfiles cAMP/cGMP binding motif profile. 341 427 IPR000595 -
Stsc120945g00002 551 Coils Coil 489 516 - -
Stsc120945g00002 551 Pfam Ion transport protein 3 268 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc120945g00002 551 MobiDBLite consensus disorder prediction 514 536 - -
Stsc120945g00002 551 SMART cnmp_10 341 473 IPR000595 -
Stsc120945g00002 551 SUPERFAMILY cAMP-binding domain-like 271 468 IPR018490 -
Stsc120945g00002 551 MobiDBLite consensus disorder prediction 502 551 - -
Stsc120945g00002 551 Gene3D Helix hairpin bin 268 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120945g00002 Stsc-Chr120945 17521 20201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120945g00002 3 547 Ion Channels AT2G28260 77.064 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120945g00002 K05391 - gmx:100791992 873.233