Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120944g00024 ATGGAGACAGATAACAACAGTGAGTCAAAGTCAAAGAAGATGGAAGACTATGAAGTGGTAGAGCAAATTGGAAGAGGAGCATTTGGTTCTGCTTTTCTGGTTCTTCACAAGTCTGAGAAGAAGAGGTATGTGCTGAAAAAGATTCGGCTGGCAAAGCAAACTGAGAAGTTCAAACGTACAGCGCACCAAGAGATGAATCTGATTGCAAAACTAAATAACCCTTATATTGTGGAATACAAAGATGCTTGGGTGGAGAAGGAGGATCATATATGCATTGTAACTGGCTACTGTGAAGGAGGTGACATGGCCGAGTACATAAAGAAATCGCGTGGATCGTTTTTCACTGAGGAGAAGGTCTGCAAATGGCTCACTCAATTGTTGATAGCTGTGGACTACTTGCACTCTAACCGTGTAATCCATAGAGATCTTAAGTGTTCCAACATATTCCTCACAAAAGATAATAACATTCGGCTTGGTGACTTTGGTCTTGCGAAGCGGCTTAATCCAGAAGATCTTGCTTCCTCGATTGTTGGAACTCCGAATTATATGTGCCCTGAGCTTCTGGCTGACATACCTTATGGTTATAAATCTGATATGTGGTCACTCGGTTGCTGCATGTTTGAGATTGCTGGACATCAACCGGCATTTCGTGCTCCGGACATGGCTGGACTTATTAATAAAATTAACAGATCCTCCATTTCTCCATTGCCAATTATTTATTCTTCCACACTGAAACAACTTATTAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCAACAGCTGCTGAATTGTTACGGCATCCTCTTTTACAACCTTATGTTCTCCGCTGTCAAAATGCATCATCTAATTTTCTCCCAGTATATCCCATAGTTAACTCAAAGGATAAAACAAAAAGATCTAAAAAATCTAGCGGCGGCAAGGACCAGAGGGACAAAGAAGCAAGATCACCAAATCATTTGGAACGGATTCATCCAATCGAGGGAAATGGACATGTACAGCCAAGGAATCTTCCAAGTGATGGTGAGCTAACAGCCTCAACCAGTGCAGAAGACAACCTCGAGAACCGGATGGTTGATCTTACAAGCTATATAGTAGAATCTTCTACTAGTATTAGTGGCTCCAAAGATGGATCAACAACATCCGAATCAACTATCTGTAGTGTGTGCAAGGACCCTGACTTTAAAATTAGACCTGCAAAGGAGACTGCAAATATTGAAATCACTTCAAATAGTACACAAGATTCAGTGCGTGAAGAACATGAATTTGCTGCTGAACTTCTTCAGAACTTAGAAGGGATTGACATAAATGCTGTTACAACACTAGTTGAAGATGCTTTTTCAGATGATGACGGTACTAATAATGCTGAAGCAGAGAGAGAAGATGCCAAACTTGAAGACTCAAGGAAATCAACTTCTTCCAGTGCTGAAGCAGAGAGAGAAGATGCCAAACTTGTGGACTCCAGGAAATCAACATCTTCCAGTGCAGGCACCAGCAGCACTGATAAAGATAAGTCCATCGACGAGGAAAGGTCGTCCCTAGTTCTGCATCCTATTAAGGTTGAATGTGACACCGAATCTGGAAGCAACTCGAAGGAAATCGAAAATCCTGATGCATCCAAAGCAGGCTCACAATTAAACTACTTATCATCTGAGAGTAATGATACACCTCCAGTTAAGGATGCAGAACAACCAAAACTTCACATACTATGCTCCCCTCATAAAGATGAAAATGCCAATGCAGTTGATCAGACAATGAATGGCATTTCATTAAGCACCTCAACAGTCAGCGACGAAACAACAAAGTCTGAGTTGGATAGTCCTTCCCAGCAAAGGGCTGAGGCTCTTGAATCTCTGCTTGAGTTATGTGCTCAGCTACTCAAGCAAGATAAGCTCGAAGAGCTTGCGGCTGTGCTAAGACCGTTCGGAAAAGAAGCTGTCTCATCCAGAGAAACAGCAATATGGCTGACAAAGAGCCTTATATCAGCACAGAAGTTTAATCCTGAAACCTAG 2013 0.4198 METDNNSESKSKKMEDYEVVEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIVTGYCEGGDMAEYIKKSRGSFFTEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNPEDLASSIVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSSISPLPIIYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCQNASSNFLPVYPIVNSKDKTKRSKKSSGGKDQRDKEARSPNHLERIHPIEGNGHVQPRNLPSDGELTASTSAEDNLENRMVDLTSYIVESSTSISGSKDGSTTSESTICSVCKDPDFKIRPAKETANIEITSNSTQDSVREEHEFAAELLQNLEGIDINAVTTLVEDAFSDDDGTNNAEAEREDAKLEDSRKSTSSSAEAEREDAKLVDSRKSTSSSAGTSSTDKDKSIDEERSSLVLHPIKVECDTESGSNSKEIENPDASKAGSQLNYLSSESNDTPPVKDAEQPKLHILCSPHKDENANAVDQTMNGISLSTSTVSDETTKSELDSPSQQRAEALESLLELCAQLLKQDKLEELAAVLRPFGKEAVSSRETAIWLTKSLISAQKFNPET 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120944g00024 670 MobiDBLite consensus disorder prediction 296 355 - -
Stsc120944g00024 670 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120944g00024 670 MobiDBLite consensus disorder prediction 447 561 - -
Stsc120944g00024 670 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120944g00024 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Stsc120944g00024 670 FunFam serine/threonine-protein kinase Nek6 isoform X2 97 285 - -
Stsc120944g00024 670 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 14 621 - -
Stsc120944g00024 670 MobiDBLite consensus disorder prediction 340 355 - -
Stsc120944g00024 670 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Stsc120944g00024 670 MobiDBLite consensus disorder prediction 453 488 - -
Stsc120944g00024 670 MobiDBLite consensus disorder prediction 532 558 - -
Stsc120944g00024 670 Gene3D Transferase(Phosphotransferase) domain 1 99 328 - -
Stsc120944g00024 670 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Stsc120944g00024 670 Pfam Protein kinase domain 17 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc120944g00024 670 MobiDBLite consensus disorder prediction 502 517 - -
Stsc120944g00024 670 FunFam Serine/threonine-protein kinase Nek6 1 96 - -
Stsc120944g00024 670 MobiDBLite consensus disorder prediction 296 329 - -
Stsc120944g00024 670 SUPERFAMILY Protein kinase-like (PK-like) 14 306 IPR011009 -
Stsc120944g00024 670 CDD STKc_Nek 16 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120944g00024 Stsc-Chr120944 96877 101121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120944g00024 10 272 MAP Kinase Kinase Kinase AT3G13530 31.698 6.23e-37 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc120944g00024 Pkinase 3.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120944g00024 K08857 - gmx:100793379 963.37